Magnesium in PDB 1vmk: Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution

Enzymatic activity of Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution

All present enzymatic activity of Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution:
2.4.2.1;

Protein crystallography data

The structure of Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution, PDB code: 1vmk was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	43.34 / 2.01
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	46.478, 74.601, 74.591, 117.34, 100.95, 100.71
*R / R_free (%)*	20.4 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution (pdb code 1vmk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution, PDB code: 1vmk:

Magnesium binding site 1 out of 1 in 1vmk

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Magnesium Binding Sites List in 1vmk

Magnesium binding site 1 out of 1 in the Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Purine Nucleoside Phosphorylase (TM1596) From Thermotoga Maritima at 2.01 A Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg266 b:56.8 occ:1.00	O	B:HOH397	2.1	47.3	1.0
	O	B:HOH358	2.1	40.1	1.0
	O	B:HOH391	2.1	48.0	1.0
	O	B:PHE51	3.8	47.9	1.0
	O	B:LYS46	3.9	35.7	1.0
	O	B:HOH409	4.0	51.1	1.0
	O	B:ILE48	4.1	32.7	1.0
	O	B:HOH373	4.2	42.6	1.0
	O	B:TYR45	4.4	33.3	1.0
	C	B:LYS46	4.5	34.2	1.0
	N	B:PHE51	4.7	41.4	1.0
	C	B:PHE51	4.7	45.0	1.0
	CA	B:LYS46	4.8	35.0	1.0
	N	B:HIS50	5.0	36.5	1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.

Page generated: Sun Aug 10 05:17:45 2025

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