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Magnesium in PDB 1wy2: Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3

Enzymatic activity of Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3

All present enzymatic activity of Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3:
3.4.13.9;

Protein crystallography data

The structure of Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3, PDB code: 1wy2 was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.697, 105.876, 106.291, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 21

Other elements in 1wy2:

The structure of Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3 also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3 (pdb code 1wy2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3, PDB code: 1wy2:

Magnesium binding site 1 out of 1 in 1wy2

Go back to Magnesium Binding Sites List in 1wy2
Magnesium binding site 1 out of 1 in the Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1409

b:37.2
occ:1.00
 O A:HOH1647 2.1 35.5 1.0
O A:HOH1747 2.1 49.4 1.0
O A:HOH1424 2.1 21.2 1.0
O A:HOH1613 2.2 39.4 1.0
O A:HOH1518 2.2 34.4 1.0
O A:HOH1746 2.2 57.2 1.0
OG1 A:THR53 3.8 24.5 1.0
O A:HOH1745 3.9 50.4 1.0
OD2 A:ASP2 4.2 23.0 1.0
O A:HOH1744 4.2 43.1 1.0
OD1 A:ASP2 4.3 24.7 1.0
CB A:PRO71 4.5 25.2 1.0
CG A:ASP2 4.7 24.3 1.0
CG A:PRO71 4.8 25.9 1.0

Reference:

H.Mizutani, N.Kunishima. Crystal Structure of the Prolidase From Pyrococcus Horikoshii OT3 To Be Published.
Page generated: Sun Aug 10 06:55:13 2025

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