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Magnesium in PDB 1xf8: Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant

Enzymatic activity of Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant

All present enzymatic activity of Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant:
2.3.2.10;

Protein crystallography data

The structure of Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant, PDB code: 1xf8 was solved by S.Biarrotte-Sorin, A.P.Maillard, M.Arthur, C.Mayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.99 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.424, 101.335, 46.954, 90.00, 102.40, 90.00
R / Rfree (%) 19.6 / 23.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant (pdb code 1xf8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant, PDB code: 1xf8:

Magnesium binding site 1 out of 1 in 1xf8

Go back to Magnesium Binding Sites List in 1xf8
Magnesium binding site 1 out of 1 in the Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Weissella Viridescens Femx (Y254F) Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg433

b:43.5
occ:1.00
O A:HOH434 2.3 30.0 1.0
O A:HOH435 2.4 23.3 1.0
O A:HOH432 2.4 39.6 1.0
O A:THR66 2.5 21.3 1.0
O A:HOH691 2.5 51.1 1.0
O A:THR64 2.6 17.3 1.0
C A:THR66 3.6 20.3 1.0
C A:THR64 3.7 18.1 1.0
N A:THR64 3.9 18.6 1.0
N A:THR66 4.1 20.1 1.0
C A:PRO65 4.4 20.2 1.0
CA A:THR66 4.5 20.6 1.0
CA A:THR64 4.5 17.6 1.0
OG1 A:THR64 4.5 16.2 1.0
N A:ASP67 4.5 21.8 1.0
CB A:ASP63 4.6 21.8 1.0
CA A:ASP67 4.6 22.5 1.0
O A:HOH431 4.7 42.4 1.0
OD1 A:ASP63 4.7 27.5 1.0
N A:PRO65 4.7 19.3 1.0
CA A:PRO65 4.8 19.7 1.0
O A:LYS68 4.9 19.0 1.0
C A:ASP63 4.9 18.1 1.0
CA A:ASP63 5.0 19.6 1.0
CG A:ASP63 5.0 24.5 1.0

Reference:

A.P.Maillard, S.Biarrotte-Sorin, R.Villet, S.Mesnage, A.Bouhss, W.Sougakoff, C.Mayer, M.Arthur. Structure-Based Site-Directed Mutagenesis of the Udp-Murnac-Pentapeptide-Binding Cavity of the Femx Alanyl Transferase From Weissella Viridescens J.Bacteriol. V. 187 3833 2005.
ISSN: ISSN 0021-9193
PubMed: 15901708
DOI: 10.1128/JB.187.11.3833-3838.2005
Page generated: Sun Aug 10 07:00:49 2025

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