Magnesium in PDB 1yvh: Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide

The structure of Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide, PDB code: 1yvh was solved by J.Hu, S.R.Hubbard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.05
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	122.257, 122.257, 55.131, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 24.7

The binding sites of Magnesium atom in the Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide (pdb code 1yvh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide, PDB code: 1yvh:

Magnesium binding site 1 out of 1 in the Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the C-Cbl Tkb Domain in Complex with the Aps Ptyr-618 Phosphopeptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg352 b:27.1 occ:1.00 OD1 A:ASP229 2.4 24.3 1.0 O A:TYR235 2.4 24.2 1.0 OE2 A:GLU240 2.5 22.8 1.0 OE1 A:GLU240 2.5 22.8 1.0 OD1 A:ASN233 2.5 24.1 1.0 OG1 A:THR231 2.7 20.6 1.0 CD A:GLU240 2.8 22.2 1.0 O A:HOH382 3.1 24.9 1.0 CG A:ASN233 3.4 24.5 1.0 C A:TYR235 3.4 24.4 1.0 CG A:ASP229 3.5 23.1 1.0 ND2 A:ASN233 3.8 24.2 1.0 CA A:ASP229 4.0 20.5 1.0 CB A:THR231 4.1 20.5 1.0 N A:TYR235 4.1 26.7 1.0 N A:THR231 4.1 20.5 1.0 N A:ASN233 4.1 24.3 1.0 OD2 A:ASP229 4.2 23.6 1.0 CA A:TYR235 4.3 25.7 1.0 N A:ILE236 4.3 23.5 1.0 CB A:ASP229 4.3 21.3 1.0 C A:ASP229 4.3 20.3 1.0 CG A:GLU240 4.3 21.3 1.0 CA A:ILE236 4.3 22.9 1.0 N A:CYS232 4.3 21.9 1.0 CA A:THR231 4.4 20.8 1.0 C A:THR231 4.5 21.3 1.0 N A:LEU230 4.5 20.5 1.0 CB A:ASN233 4.6 24.6 1.0 CB A:TYR235 4.6 27.5 1.0 CD1 A:ILE236 4.6 22.5 1.0 CA A:ASN233 4.7 25.5 1.0 N A:ASP234 4.7 26.6 1.0 CG2 A:THR231 4.8 20.0 1.0 N A:SER237 4.8 22.6 1.0 O A:ASP229 4.8 19.4 1.0 C A:ASN233 4.9 25.9 1.0

J.Hu, S.R.Hubbard. Structural Characterization of A Novel Cbl Phosphotyrosine Recognition Motif in the Aps Family of Adapter Proteins J.Biol.Chem. V. 280 18943 2005.
ISSN: ISSN 0021-9258
PubMed: 15737992
DOI: 10.1074/JBC.M414157200