Atomistry » Magnesium » PDB 1z6n-1zk2 » 1z9k
Atomistry »
  Magnesium »
    PDB 1z6n-1zk2 »
      1z9k »

Magnesium in PDB 1z9k: Photosynthetic Reaction Center From Rhodobacter Sphaeroides

Protein crystallography data

The structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides, PDB code: 1z9k was solved by A.Camara-Artigas, J.P.Allen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 4.60
Space group P 42 2 2
Cell size a, b, c (Å), α, β, γ (°) 207.800, 207.800, 107.500, 90.00, 90.00, 90.00
R / Rfree (%) 33 / 33

Other elements in 1z9k:

The structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides (pdb code 1z9k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides, PDB code: 1z9k:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1z9k

Go back to Magnesium Binding Sites List in 1z9k
Magnesium binding site 1 out of 4 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg850

b:90.0
occ:1.00
MG A:BCL850 0.0 90.0 1.0
ND A:BCL850 2.0 90.0 1.0
NC A:BCL850 2.1 90.0 1.0
NA A:BCL850 2.1 90.0 1.0
NB A:BCL850 2.1 90.0 1.0
NE2 B:HIS182 2.7 90.0 1.0
C4A A:BCL850 3.0 90.0 1.0
C1B A:BCL850 3.0 90.0 1.0
C4D A:BCL850 3.1 90.0 1.0
C1D A:BCL850 3.1 90.0 1.0
C1C A:BCL850 3.1 90.0 1.0
C4C A:BCL850 3.1 90.0 1.0
C4B A:BCL850 3.2 90.0 1.0
C1A A:BCL850 3.2 90.0 1.0
CHB A:BCL850 3.3 90.0 1.0
CHC A:BCL850 3.4 90.0 1.0
CHD A:BCL850 3.4 90.0 1.0
CHA A:BCL850 3.5 90.0 1.0
CD2 B:HIS182 3.6 90.0 1.0
CE1 B:HIS182 3.7 90.0 1.0
C19 A:BCL850 4.0 90.0 1.0
C2D A:BCL850 4.3 90.0 1.0
C3D A:BCL850 4.3 90.0 1.0
C2B A:BCL850 4.3 90.0 1.0
C3A A:BCL850 4.3 90.0 1.0
C3C A:BCL850 4.4 90.0 1.0
C2C A:BCL850 4.4 90.0 1.0
C3B A:BCL850 4.4 90.0 1.0
C2A A:BCL850 4.5 90.0 1.0
CG B:HIS182 4.8 90.0 1.0
ND1 B:HIS182 4.8 90.0 1.0
C18 A:BCL850 5.0 90.0 1.0

Magnesium binding site 2 out of 4 in 1z9k

Go back to Magnesium Binding Sites List in 1z9k
Magnesium binding site 2 out of 4 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg851

b:90.0
occ:1.00
MG A:BCL851 0.0 90.0 1.0
ND A:BCL851 2.0 90.0 1.0
NC A:BCL851 2.1 90.0 1.0
NB A:BCL851 2.1 90.0 1.0
NA A:BCL851 2.1 90.0 1.0
NE2 A:HIS173 2.6 90.0 1.0
CE1 A:HIS173 2.9 90.0 1.0
C4A A:BCL851 3.0 90.0 1.0
C1B A:BCL851 3.0 90.0 1.0
C4D A:BCL851 3.0 90.0 1.0
C1C A:BCL851 3.1 90.0 1.0
C1D A:BCL851 3.1 90.0 1.0
C4B A:BCL851 3.1 90.0 1.0
C4C A:BCL851 3.1 90.0 1.0
C1A A:BCL851 3.2 90.0 1.0
CHB A:BCL851 3.3 90.0 1.0
CHC A:BCL851 3.3 90.0 1.0
OBB B:BCL852 3.3 90.0 1.0
CAB B:BCL852 3.4 90.0 1.0
CHD A:BCL851 3.4 90.0 1.0
CHA A:BCL851 3.5 90.0 1.0
CBB B:BCL852 3.7 90.0 1.0
CD2 A:HIS173 3.9 90.0 1.0
ND1 A:HIS173 4.2 90.0 1.0
C3B B:BCL852 4.2 90.0 1.0
C2D A:BCL851 4.2 90.0 1.0
C2B A:BCL851 4.3 90.0 1.0
C3D A:BCL851 4.3 90.0 1.0
C3A A:BCL851 4.4 90.0 1.0
C3B A:BCL851 4.4 90.0 1.0
C2C A:BCL851 4.4 90.0 1.0
C3C A:BCL851 4.4 90.0 1.0
C2A A:BCL851 4.5 90.0 1.0
CG A:HIS173 4.7 90.0 1.0
CD2 A:PHE167 4.8 90.0 1.0
C4B B:BCL852 4.9 90.0 1.0
CBD A:BCL851 5.0 90.0 1.0

Magnesium binding site 3 out of 4 in 1z9k

Go back to Magnesium Binding Sites List in 1z9k
Magnesium binding site 3 out of 4 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg852

b:90.0
occ:1.00
MG B:BCL852 0.0 90.0 1.0
ND B:BCL852 2.0 90.0 1.0
NB B:BCL852 2.1 90.0 1.0
NA B:BCL852 2.1 90.0 1.0
NC B:BCL852 2.1 90.0 1.0
NE2 B:HIS202 2.2 90.0 1.0
CE1 B:HIS202 2.6 90.0 1.0
C4A B:BCL852 3.0 90.0 1.0
C4D B:BCL852 3.0 90.0 1.0
C1B B:BCL852 3.0 90.0 1.0
C1D B:BCL852 3.0 90.0 1.0
C1C B:BCL852 3.1 90.0 1.0
C4B B:BCL852 3.1 90.0 1.0
C4C B:BCL852 3.1 90.0 1.0
C1A B:BCL852 3.2 90.0 1.0
CHB B:BCL852 3.3 90.0 1.0
CHC B:BCL852 3.3 90.0 1.0
CHD B:BCL852 3.4 90.0 1.0
CHA B:BCL852 3.4 90.0 1.0
CD2 B:HIS202 3.5 90.0 1.0
CBB A:BCL851 3.5 90.0 1.0
CAB A:BCL851 3.6 90.0 1.0
ND1 B:HIS202 3.8 90.0 1.0
OBB A:BCL851 3.9 90.0 1.0
C3B A:BCL851 4.2 90.0 1.0
C2D B:BCL852 4.2 90.0 1.0
C2B B:BCL852 4.2 90.0 1.0
C3D B:BCL852 4.3 90.0 1.0
CG B:HIS202 4.3 90.0 1.0
C3B B:BCL852 4.3 90.0 1.0
C3A B:BCL852 4.3 90.0 1.0
C2C B:BCL852 4.4 90.0 1.0
C3C B:BCL852 4.4 90.0 1.0
C2A B:BCL852 4.5 90.0 1.0
C2B A:BCL851 4.8 90.0 1.0
CBD B:BCL852 4.9 90.0 1.0
C4B A:BCL851 5.0 90.0 1.0

Magnesium binding site 4 out of 4 in 1z9k

Go back to Magnesium Binding Sites List in 1z9k
Magnesium binding site 4 out of 4 in the Photosynthetic Reaction Center From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosynthetic Reaction Center From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg853

b:90.0
occ:1.00
MG B:BCL853 0.0 90.0 1.0
ND B:BCL853 2.0 90.0 1.0
NA B:BCL853 2.0 90.0 1.0
NC B:BCL853 2.0 90.0 1.0
NB B:BCL853 2.1 90.0 1.0
C4A B:BCL853 3.0 90.0 1.0
NE2 A:HIS153 3.0 90.0 1.0
C1B B:BCL853 3.0 90.0 1.0
C4D B:BCL853 3.0 90.0 1.0
C1C B:BCL853 3.0 90.0 1.0
C1D B:BCL853 3.0 90.0 1.0
C4C B:BCL853 3.1 90.0 1.0
C4B B:BCL853 3.1 90.0 1.0
C1A B:BCL853 3.1 90.0 1.0
CHB B:BCL853 3.3 90.0 1.0
CHC B:BCL853 3.3 90.0 1.0
CHD B:BCL853 3.4 90.0 1.0
CHA B:BCL853 3.5 90.0 1.0
CD2 A:HIS153 3.8 90.0 1.0
CE1 A:HIS153 4.1 90.0 1.0
C2D B:BCL853 4.2 90.0 1.0
C2B B:BCL853 4.2 90.0 1.0
C3D B:BCL853 4.3 90.0 1.0
C3A B:BCL853 4.3 90.0 1.0
C3B B:BCL853 4.3 90.0 1.0
C2C B:BCL853 4.4 90.0 1.0
C3C B:BCL853 4.4 90.0 1.0
C2A B:BCL853 4.4 90.0 1.0
OBB A:BPH855 4.9 90.0 1.0
CE2 B:TYR210 4.9 90.0 1.0
CAA B:BCL853 5.0 90.0 1.0
CBD B:BCL853 5.0 90.0 1.0

Reference:

G.Uyeda, A.Camara-Artigas, J.C.Williams, J.P.Allen. Design of A Redox-Linked Active Metal Site: Manganese Bound to Bacterial Reaction Centers at A Site Resembling That of Photosystem II Biochemistry V. 44 7389 2005.
ISSN: ISSN 0006-2960
PubMed: 15895982
DOI: 10.1021/BI050377N
Page generated: Tue Aug 13 20:05:18 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy