Magnesium in PDB 1zb6: Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene

The structure of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene, PDB code: 1zb6 was solved by T.Kuzuyama, J.P.Noel, S.B.Richard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.74 / 1.95
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.319, 90.243, 47.513, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 26.3

The binding sites of Magnesium atom in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene (pdb code 1zb6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene, PDB code: 1zb6:

Magnesium binding site 1 out of 1 in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and 1,6-Dihydroxynaphtalene within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg308 b:44.2 occ:1.00 O A:HOH595 2.0 44.0 1.0 O3B A:GST502 2.1 40.7 1.0 OD2 A:ASP62 2.2 36.4 1.0 O A:HOH598 2.2 44.0 1.0 O A:HOH611 2.3 44.0 1.0 CG A:ASP62 3.2 39.7 1.0 PB A:GST502 3.6 41.0 1.0 CB A:ASP62 3.6 37.9 1.0 NZ A:LYS118 3.8 42.9 1.0 O A:HOH675 4.1 44.0 1.0 O2A A:GST502 4.2 39.9 1.0 S1 A:GST502 4.2 47.4 1.0 O3A A:GST502 4.2 42.6 1.0 OD1 A:ASP62 4.3 39.3 1.0 OD2 A:ASP110 4.3 55.9 1.0 O2B A:GST502 4.4 41.0 1.0 CE A:LYS118 4.4 43.6 1.0 O1B A:GST502 4.5 40.8 1.0 PA A:GST502 4.5 41.2 1.0 C1 A:GST502 4.6 48.7 1.0 O A:HOH518 4.7 48.0 1.0 O A:HOH624 4.8 44.0 1.0 O A:HOH603 4.8 44.0 1.0 O A:HOH592 4.9 44.0 1.0

T.Kuzuyama, J.P.Noel, S.B.Richard. Structural Basis For the Promiscuous Biosynthetic Prenylation of Aromatic Natural Products. Nature V. 435 983 2005.
ISSN: ISSN 0028-0836
PubMed: 15959519
DOI: 10.1038/NATURE03668