Magnesium in PDB 1zdw: Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin

The structure of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin, PDB code: 1zdw was solved by T.Kuzuyama, J.P.Noel, S.B.Richard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.59 / 2.02
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.563, 91.609, 48.589, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.4

The binding sites of Magnesium atom in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin (pdb code 1zdw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin, PDB code: 1zdw:

Magnesium binding site 1 out of 1 in the Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Co-Crystal Structure of ORF2 An Aromatic Prenyl Transferase From Streptomyces Sp. Strain CL190 Complexed with Gspp and Flaviolin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:40.8 occ:1.00 O2B A:GST501 2.0 36.6 1.0 O A:HOH762 2.2 40.8 1.0 O A:HOH764 2.2 34.1 1.0 OD2 A:ASP62 2.2 22.2 1.0 O A:HOH766 2.2 29.0 1.0 O A:HOH765 2.3 39.6 1.0 CG A:ASP62 3.2 22.3 1.0 PB A:GST501 3.6 39.1 1.0 CB A:ASP62 3.6 20.3 1.0 NZ A:LYS118 3.9 26.2 1.0 S1 A:GST501 4.1 39.6 1.0 O3A A:GST501 4.2 32.4 1.0 O1A A:GST501 4.2 29.5 1.0 OD1 A:ASP62 4.3 19.6 1.0 O1B A:GST501 4.3 34.5 1.0 PA A:GST501 4.4 28.3 1.0 OD1 A:ASP110 4.5 27.3 1.0 O A:HOH743 4.5 31.7 1.0 O3B A:GST501 4.6 38.5 1.0 OD2 A:ASP110 4.6 32.4 1.0 O A:HOH942 4.6 37.2 1.0 CE A:LYS118 4.6 28.0 1.0 O A:HOH737 4.7 26.6 1.0 O A:HOH731 4.7 21.9 1.0 CG A:ASP110 5.0 30.0 1.0

T.Kuzuyama, J.P.Noel, S.B.Richard. Structural Basis For the Promiscuous Biosynthetic Prenylation of Aromatic Natural Products. Nature V. 435 983 2005.
ISSN: ISSN 0028-0836
PubMed: 15959519
DOI: 10.1038/NATURE03668