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Magnesium in PDB 1zuu: Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution

Protein crystallography data

The structure of Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution, PDB code: 1zuu was solved by P.Kursula, I.Kursula, F.Lehmann, P.Zou, Y.H.Song, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 0.97
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 36.740, 36.740, 76.550, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 14.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution (pdb code 1zuu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution, PDB code: 1zuu:

Magnesium binding site 1 out of 1 in 1zuu

Go back to Magnesium Binding Sites List in 1zuu
Magnesium binding site 1 out of 1 in the Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Yeast BZZ1 First SH3 Domain at 0.97-A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1031

b:7.3
occ:1.00
O A:HOH1068 2.1 11.0 1.0
O A:HOH1067 2.1 10.5 1.0
O A:HOH1057 2.1 9.9 1.0
O A:HOH1066 2.1 8.5 1.0
O A:HOH1119 2.1 7.7 1.0
OD1 A:ASP14 2.1 8.9 0.5
OD1 A:ASP14 2.1 6.7 0.5
CG A:ASP14 3.0 8.1 0.5
CG A:ASP14 3.2 7.3 0.5
OD2 A:ASP14 3.3 11.2 0.5
OD2 A:ASP14 3.5 10.5 0.5
OD1 A:ASP13 4.1 12.8 0.5
O A:HOH1074 4.2 15.2 0.5
O A:HOH1128 4.2 8.1 0.5
OD2 A:ASP13 4.3 16.4 0.5
OD2 A:ASP15 4.3 7.5 0.5
CG A:ASP13 4.3 9.5 0.5
OD1 A:ASP15 4.3 6.3 0.5
O A:HOH1142 4.4 28.1 1.0
CG A:ASP15 4.4 5.8 0.5
CB A:ASP14 4.5 8.1 0.5
CB A:ASP14 4.5 9.6 0.5
CB A:ASP15 4.7 3.6 0.5
CG A:ASP15 4.7 5.3 0.5
N A:ASP15 4.7 4.8 0.5
N A:ASP14 4.8 8.6 0.5
N A:ASP15 4.8 6.0 0.5
OD1 A:ASP15 4.8 6.6 0.5
CB A:ASP15 4.9 6.5 0.5
N A:ASP14 4.9 7.4 0.5
O A:HOH1081 4.9 9.4 0.5
CA A:ASP14 4.9 7.1 0.5

Reference:

P.Kursula, I.Kursula, F.Lehmann, P.Zou, Y.H.Song, M.Wilmanns. Structural Genomics of Yeast SH3 Domains To Be Published.
Page generated: Tue Aug 13 20:14:19 2024

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