Magnesium in PDB 2atx: Crystal Structure of the TC10 Gppnhp Complex

All present enzymatic activity of Crystal Structure of the TC10 Gppnhp Complex:
3.6.5.2;

The structure of Crystal Structure of the TC10 Gppnhp Complex, PDB code: 2atx was solved by L.Hemsath, R.Dvorsky, D.Fiegen, M.F.Carlier, M.R.Ahmadian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.84 / 2.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.690, 82.200, 114.310, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 26

The binding sites of Magnesium atom in the Crystal Structure of the TC10 Gppnhp Complex (pdb code 2atx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the TC10 Gppnhp Complex, PDB code: 2atx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the TC10 Gppnhp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the TC10 Gppnhp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:19.7 occ:1.00 O2G A:GNP200 2.0 31.0 1.0 O A:HOH203 2.1 63.8 1.0 O2B A:GNP200 2.2 31.8 1.0 OG1 A:THR31 2.2 25.2 1.0 O A:THR49 2.4 28.6 1.0 O A:HOH202 2.5 35.5 1.0 PG A:GNP200 3.2 30.3 1.0 CB A:THR31 3.3 26.8 1.0 PB A:GNP200 3.4 30.5 1.0 OD2 A:ASP71 3.4 28.3 1.0 C A:THR49 3.6 29.2 1.0 N3B A:GNP200 3.6 29.7 1.0 N A:THR31 3.7 28.1 1.0 OD1 A:ASP71 3.7 26.4 1.0 O1G A:GNP200 3.9 29.0 1.0 CG A:ASP71 4.0 29.6 1.0 CA A:THR31 4.0 27.7 1.0 O1B A:GNP200 4.1 28.6 1.0 CB A:LYS30 4.3 28.1 1.0 O A:THR72 4.4 33.6 1.0 CG2 A:THR31 4.5 25.0 1.0 N A:VAL50 4.5 28.9 1.0 CA A:VAL50 4.5 29.1 1.0 CA A:THR49 4.5 29.8 1.0 O3G A:GNP200 4.5 32.1 1.0 CG2 A:VAL50 4.6 28.7 1.0 O2A A:GNP200 4.6 20.8 1.0 O3A A:GNP200 4.6 27.9 1.0 O A:PRO48 4.7 31.4 1.0 CA A:ALA73 4.7 37.6 1.0 C A:LYS30 4.7 28.0 1.0 C A:THR72 4.8 33.8 1.0 NZ A:LYS30 4.8 25.0 1.0 CE A:LYS30 4.8 27.3 1.0 N A:ALA73 4.9 35.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the TC10 Gppnhp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the TC10 Gppnhp Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1201 b:20.0 occ:1.00 O2B B:GNP1200 1.9 32.0 1.0 O2G B:GNP1200 2.0 36.2 1.0 O B:HOH1202 2.0 41.7 1.0 OG1 B:THR31 2.1 22.6 1.0 O B:HOH1203 2.2 46.1 1.0 O B:THR49 2.2 29.4 1.0 PG B:GNP1200 3.1 36.9 1.0 PB B:GNP1200 3.1 33.6 1.0 CB B:THR31 3.2 25.8 1.0 N3B B:GNP1200 3.3 32.7 1.0 C B:THR49 3.4 29.5 1.0 N B:THR31 3.8 27.3 1.0 O2A B:GNP1200 3.9 20.4 1.0 CA B:THR31 4.0 26.9 1.0 OD2 B:ASP71 4.0 26.9 1.0 O1G B:GNP1200 4.1 34.8 1.0 OD1 B:ASP71 4.1 26.3 1.0 CA B:THR49 4.1 29.5 1.0 O3A B:GNP1200 4.2 28.3 1.0 O1B B:GNP1200 4.2 30.6 1.0 CG2 B:THR31 4.3 23.2 1.0 O B:PRO48 4.3 30.2 1.0 O3G B:GNP1200 4.3 38.2 1.0 PA B:GNP1200 4.4 23.4 1.0 CG B:ASP71 4.5 29.2 1.0 N B:VAL50 4.5 29.4 1.0 O1A B:GNP1200 4.5 24.0 1.0 O B:THR72 4.6 34.3 1.0 CB B:LYS30 4.7 26.7 1.0 CG2 B:THR49 4.8 30.5 1.0 CA B:VAL50 4.8 29.3 1.0 CE B:LYS30 4.9 27.2 1.0 C B:LYS30 4.9 27.3 1.0

L.Hemsath, R.Dvorsky, D.Fiegen, M.F.Carlier, M.R.Ahmadian. An Electrostatic Steering Mechanism of CDC42 Recognition By Wiskott-Aldrich Syndrome Proteins Mol.Cell V. 20 313 2005.
ISSN: ISSN 1097-2765
PubMed: 16246732
DOI: 10.1016/J.MOLCEL.2005.08.036