Magnesium in PDB 2cz1: Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

Enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

All present enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition:
4.2.1.84;

Protein crystallography data

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1 was solved by Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 1.39
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	115.329, 60.792, 82.024, 90.00, 124.96, 90.00
*R / R_free (%)*	16.3 / 19

Other elements in 2cz1:

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition also contains other interesting chemical elements:

Iron

(Fe)

1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition (pdb code 2cz1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1:

Magnesium binding site 1 out of 1 in 2cz1

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Magnesium Binding Sites List in 2cz1

Magnesium binding site 1 out of 1 in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg1302 b:19.2 occ:1.00	O	B:HOH1307	1.7	53.9	1.0
	O	B:HOH1305	1.8	1.7	0.2
	O	B:HOH1303	2.0	12.7	1.0
	O	B:HOH1306	2.1	4.8	0.5
	O	B:HOH1304	2.1	15.1	1.0
	O	B:HOH1305	2.2	12.6	0.8
	O	B:HOH1306	2.2	12.4	0.5
	O	B:HOH1308	2.3	10.7	1.0
	O	B:HOH1540	3.8	24.3	1.0
	O	B:HOH1474	4.0	17.2	1.0
	O	B:HOH1566	4.3	24.9	1.0
	O	B:HOH1351	4.4	13.1	1.0
	OD2	B:ASP6	4.4	7.6	1.0
	CB	B:ALA144	4.4	8.6	1.0
	O	B:ASP6	4.5	8.1	1.0
	O	B:ASP2	4.5	9.2	1.0
	O	B:GLY3	4.5	8.3	1.0
	CB	B:ASP2	4.5	8.1	1.0
	CB	B:ASP6	4.6	7.3	1.0
	OD1	B:ASP2	4.6	10.3	1.0
	CG	B:ASP2	4.6	10.5	1.0
	C	B:ASP2	4.6	10.1	1.0
	CG	B:ASP6	4.7	7.6	1.0
	CA	B:ASP2	4.7	8.3	1.0

Reference:

Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya. Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition To Be Published.

Page generated: Tue Aug 13 22:22:50 2024

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