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Magnesium in PDB 2cz1: Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

Enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

All present enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition:
4.2.1.84;

Protein crystallography data

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1 was solved by Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.39
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.329, 60.792, 82.024, 90.00, 124.96, 90.00
R / Rfree (%) 16.3 / 19

Other elements in 2cz1:

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition also contains other interesting chemical elements:

Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition (pdb code 2cz1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1:

Magnesium binding site 1 out of 1 in 2cz1

Go back to Magnesium Binding Sites List in 2cz1
Magnesium binding site 1 out of 1 in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1302

b:19.2
occ:1.00
O B:HOH1307 1.7 53.9 1.0
O B:HOH1305 1.8 1.7 0.2
O B:HOH1303 2.0 12.7 1.0
O B:HOH1306 2.1 4.8 0.5
O B:HOH1304 2.1 15.1 1.0
O B:HOH1305 2.2 12.6 0.8
O B:HOH1306 2.2 12.4 0.5
O B:HOH1308 2.3 10.7 1.0
O B:HOH1540 3.8 24.3 1.0
O B:HOH1474 4.0 17.2 1.0
O B:HOH1566 4.3 24.9 1.0
O B:HOH1351 4.4 13.1 1.0
OD2 B:ASP6 4.4 7.6 1.0
CB B:ALA144 4.4 8.6 1.0
O B:ASP6 4.5 8.1 1.0
O B:ASP2 4.5 9.2 1.0
O B:GLY3 4.5 8.3 1.0
CB B:ASP2 4.5 8.1 1.0
CB B:ASP6 4.6 7.3 1.0
OD1 B:ASP2 4.6 10.3 1.0
CG B:ASP2 4.6 10.5 1.0
C B:ASP2 4.6 10.1 1.0
CG B:ASP6 4.7 7.6 1.0
CA B:ASP2 4.7 8.3 1.0

Reference:

Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya. Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition To Be Published.
Page generated: Sun Aug 10 10:21:59 2025

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