Magnesium in PDB 2d2c: Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus

All present enzymatic activity of Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus:
1.10.99.1;

The structure of Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus, PDB code: 2d2c was solved by J.Yan, G.Kurisu, W.A.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.76 / 3.80
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	156.587, 156.587, 361.786, 90.00, 90.00, 120.00
R / Rfree (%)	27.6 / 37.8

The structure of Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus also contains other interesting chemical elements:

Bromine	(Br)	4 atoms
Iron	(Fe)	12 atoms

The binding sites of Magnesium atom in the Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus (pdb code 2d2c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus, PDB code: 2d2c:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:21.0 occ:1.00 MG B:CLA201 0.0 21.0 1.0 ND B:CLA201 2.0 0.4 1.0 NB B:CLA201 2.1 0.4 1.0 NA B:CLA201 2.1 0.4 1.0 NC B:CLA201 2.1 0.4 1.0 C4D B:CLA201 3.0 0.4 1.0 C1B B:CLA201 3.1 0.4 1.0 C1D B:CLA201 3.1 0.4 1.0 C4A B:CLA201 3.1 0.4 1.0 C4B B:CLA201 3.1 0.4 1.0 C1A B:CLA201 3.2 0.4 1.0 C1C B:CLA201 3.2 0.4 1.0 C4C B:CLA201 3.2 0.4 1.0 CHB B:CLA201 3.4 0.4 1.0 CHA B:CLA201 3.4 0.4 1.0 CHD B:CLA201 3.5 0.4 1.0 CHC B:CLA201 3.5 0.4 1.0 O B:GLY136 3.7 87.5 1.0 OG1 B:THR140 3.9 57.7 1.0 C3D B:CLA201 4.2 0.4 1.0 C2D B:CLA201 4.3 0.4 1.0 C2B B:CLA201 4.3 0.4 1.0 C3B B:CLA201 4.3 0.4 1.0 C3A B:CLA201 4.4 0.4 1.0 C2A B:CLA201 4.4 0.4 1.0 C2C B:CLA201 4.5 0.4 1.0 C3C B:CLA201 4.5 0.4 1.0 CG1 B:VAL104 4.6 39.1 1.0 CG2 B:THR140 4.7 57.7 1.0 CB B:THR140 4.9 57.7 1.0 C B:GLY136 4.9 87.5 1.0 CBD B:CLA201 5.0 0.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Cytochrome B6F Complex with Dbmib From M. Laminosus within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg1201 b:29.3 occ:1.00 MG O:CLA1201 0.0 29.3 1.0 NA O:CLA1201 2.0 72.4 1.0 ND O:CLA1201 2.0 72.4 1.0 NB O:CLA1201 2.1 72.4 1.0 NC O:CLA1201 2.1 72.4 1.0 C4D O:CLA1201 2.9 72.4 1.0 C4A O:CLA1201 2.9 72.4 1.0 C1A O:CLA1201 3.0 72.4 1.0 C1B O:CLA1201 3.0 72.4 1.0 C1D O:CLA1201 3.1 72.4 1.0 C4C O:CLA1201 3.1 72.4 1.0 C1C O:CLA1201 3.2 72.4 1.0 O O:GLY136 3.2 22.3 1.0 C4B O:CLA1201 3.2 72.4 1.0 CHB O:CLA1201 3.3 72.4 1.0 CHA O:CLA1201 3.4 72.4 1.0 CHD O:CLA1201 3.5 72.4 1.0 CHC O:CLA1201 3.5 72.4 1.0 C O:GLY136 4.2 22.3 1.0 C3D O:CLA1201 4.2 72.4 1.0 C3A O:CLA1201 4.2 72.4 1.0 C2D O:CLA1201 4.3 72.4 1.0 C2A O:CLA1201 4.3 72.4 1.0 C2B O:CLA1201 4.3 72.4 1.0 C3B O:CLA1201 4.4 72.4 1.0 CG2 O:THR137 4.4 16.1 1.0 C3C O:CLA1201 4.5 72.4 1.0 C2C O:CLA1201 4.5 72.4 1.0 OG1 O:THR140 4.5 0.2 1.0 CA O:GLY136 4.7 22.3 1.0 CBD O:CLA1201 4.9 72.4 1.0

J.Yan, G.Kurisu, W.A.Cramer. Intraprotein Transfer of the Quinone Analogue Inhibitor 2,5-Dibromo-3-Methyl-6-Isopropyl-P-Benzoquinone in the Cytochrome B6F Complex Proc.Natl.Acad.Sci.Usa V. 103 69 2006.
ISSN: ISSN 0027-8424
PubMed: 16371475
DOI: 10.1073/PNAS.0504909102