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Magnesium in PDB 2de3: Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid

Enzymatic activity of Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid

All present enzymatic activity of Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid:
3.13.1.3;

Protein crystallography data

The structure of Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid, PDB code: 2de3 was solved by W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.23 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 154.670, 46.190, 113.960, 90.00, 115.81, 90.00
R / Rfree (%) 18 / 19.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid (pdb code 2de3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid, PDB code: 2de3:

Magnesium binding site 1 out of 1 in 2de3

Go back to Magnesium Binding Sites List in 2de3
Magnesium binding site 1 out of 1 in the Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dszb C27S Mutant in Complex with 2'- Hydroxybiphenyl-2-Sulfinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:19.9
occ:0.50
 O B:HOH2529 2.1 19.9 0.5
O B:HOH2553 2.1 19.6 0.5
O B:HOH2528 2.1 17.7 1.0
O B:HOH2530 2.1 18.5 1.0
O B:HOH2426 4.1 15.4 1.0
O B:HOH2516 4.2 22.5 1.0
OD1 B:ASP220 4.2 19.1 1.0
OD2 B:ASP220 4.2 13.9 1.0
NH1 B:ARG120 4.4 26.3 1.0
O B:HOH2591 4.5 27.4 1.0
CG B:ASP220 4.7 14.1 1.0

Reference:

W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura. Crystal Structure and Desulfurization Mechanism of 2'-Hydroxybiphenyl-2-Sulfinic Acid Desulfinase. J.Biol.Chem. V. 281 32534 2006.
ISSN: ISSN 0021-9258
PubMed: 16891315
DOI: 10.1074/JBC.M602974200
Page generated: Sun Aug 10 10:26:35 2025

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