Magnesium in PDB 2dy1: Crystal Structure of Ef-G-2 From Thermus Thermophilus

The structure of Crystal Structure of Ef-G-2 From Thermus Thermophilus, PDB code: 2dy1 was solved by H.Wang, C.Takemoto, K.Murayama, T.Terada, L.Chen, Z.J.Liu, B.C.Wang, M.Shirouzu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.61 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	159.194, 56.129, 92.189, 90.00, 104.57, 90.00
R / Rfree (%)	18.8 / 20.4

The binding sites of Magnesium atom in the Crystal Structure of Ef-G-2 From Thermus Thermophilus (pdb code 2dy1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ef-G-2 From Thermus Thermophilus, PDB code: 2dy1:

Magnesium binding site 1 out of 1 in the Crystal Structure of Ef-G-2 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ef-G-2 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:9.3 occ:1.00 O2G A:GTP700 2.0 10.8 1.0 O2B A:GTP700 2.1 8.0 1.0 OG1 A:THR61 2.1 6.9 1.0 O A:HOH703 2.1 9.0 1.0 O A:HOH702 2.1 11.7 1.0 OG1 A:THR23 2.1 11.5 1.0 CB A:THR61 3.0 6.9 1.0 CB A:THR23 3.2 9.3 1.0 PB A:GTP700 3.3 11.3 1.0 PG A:GTP700 3.3 10.9 1.0 O3B A:GTP700 3.5 9.8 1.0 N A:THR61 3.8 8.8 1.0 N A:THR23 3.8 9.4 1.0 CA A:THR61 4.0 10.4 1.0 OD2 A:ASP50 4.1 11.5 1.0 CA A:THR23 4.1 9.5 1.0 CG2 A:THR61 4.1 9.5 1.0 O2A A:GTP700 4.2 15.2 1.0 OD1 A:ASP80 4.2 10.2 1.0 O3G A:GTP700 4.2 14.9 1.0 O1B A:GTP700 4.2 11.9 1.0 CG2 A:THR23 4.3 11.5 1.0 OD1 A:ASP50 4.3 10.9 1.0 O1G A:GTP700 4.3 13.2 1.0 OD2 A:ASP80 4.3 10.6 1.0 O3A A:GTP700 4.4 13.8 1.0 O A:ALA81 4.6 9.1 1.0 CB A:LYS22 4.6 10.4 1.0 CG A:ASP50 4.6 12.6 1.0 PA A:GTP700 4.7 14.9 1.0 CG A:ASP80 4.7 10.1 1.0 CE A:LYS22 4.7 14.3 1.0 O1A A:GTP700 4.8 14.8 1.0 C A:THR60 4.8 9.8 1.0 C A:LYS22 4.9 11.5 1.0

H.Wang, C.Takemoto, K.Murayama, T.Terada, L.Chen, Z.J.Liu, B.C.Wang, M.Shirouzu, S.Yokoyama. Crystal Structure of Ef-G-2 From Thermus Thermophilus To Be Published.