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Magnesium in PDB 2e76: Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus

Enzymatic activity of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus

All present enzymatic activity of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus:
1.10.99.1;

Protein crystallography data

The structure of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus, PDB code: 2e76 was solved by W.A.Cramer, E.Yamashita, H.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.27 / 3.41
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 157.227, 157.227, 363.295, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 25.6

Other elements in 2e76:

The structure of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus also contains other interesting chemical elements:

Cadmium (Cd) 1 atom
Iron (Fe) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus (pdb code 2e76). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus, PDB code: 2e76:

Magnesium binding site 1 out of 1 in 2e76

Go back to Magnesium Binding Sites List in 2e76
Magnesium binding site 1 out of 1 in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:44.8
occ:1.00
 MG B:CLA201 0.0 44.8 1.0
O B:HOH211 1.9 15.4 1.0
NA B:CLA201 2.0 43.2 1.0
NB B:CLA201 2.1 50.8 1.0
ND B:CLA201 2.1 52.5 1.0
NC B:CLA201 2.1 61.0 1.0
C1A B:CLA201 2.9 32.0 1.0
C4D B:CLA201 3.0 46.0 1.0
C4A B:CLA201 3.0 46.9 1.0
C4B B:CLA201 3.1 51.9 1.0
C1C B:CLA201 3.1 51.8 1.0
C1B B:CLA201 3.1 38.1 1.0
C4C B:CLA201 3.1 63.6 1.0
C1D B:CLA201 3.2 33.2 1.0
CHA B:CLA201 3.4 32.0 1.0
CHB B:CLA201 3.4 39.0 1.0
CHC B:CLA201 3.4 43.4 1.0
O B:HOH212 3.6 48.0 1.0
CHD B:CLA201 3.6 49.1 1.0
C3D B:CLA201 4.2 39.0 1.0
C2A B:CLA201 4.3 38.4 1.0
C3A B:CLA201 4.3 30.8 1.0
C3B B:CLA201 4.4 58.8 1.0
C2C B:CLA201 4.4 53.8 1.0
OG1 B:THR140 4.4 58.6 1.0
C2D B:CLA201 4.4 34.4 1.0
C2B B:CLA201 4.4 61.0 1.0
C3C B:CLA201 4.5 59.0 1.0
CBQ B:OPC1001 4.8 64.2 1.0
CBS B:OPC1001 4.8 62.1 1.0
CD1 B:LEU108 4.8 38.3 1.0
CBD B:CLA201 4.9 31.5 1.0
CAA B:CLA201 5.0 49.6 1.0

Reference:

E.Yamashita, H.Zhang, W.A.Cramer. Structure of the Cytochrome B(6)F Complex: Quinone Analogue Inhibitors As Ligands of Heme C(N) J.Mol.Biol. V. 370 39 2007.
ISSN: ISSN 0022-2836
PubMed: 17498743
DOI: 10.1016/J.JMB.2007.04.011
Page generated: Sun Aug 10 10:34:32 2025

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