Magnesium in PDB 2e89: Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine

The structure of Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine, PDB code: 2e89 was solved by M.Kuratani, Y.Yoshikawa, S.Takahashi, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.03 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	97.420, 81.570, 109.110, 90.00, 105.98, 90.00
R / Rfree (%)	22.9 / 27.4

The binding sites of Magnesium atom in the Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine (pdb code 2e89). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine, PDB code: 2e89:

Magnesium binding site 1 out of 1 in the Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Aquifex Aeolicus Tils in A Complex with Atp, Magnesium Ion, and L-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:59.1 occ:1.00 OD1 C:ASP36 2.5 51.0 1.0 O C:HOH932 2.7 44.2 1.0 OD1 C:ASP137 2.8 30.8 1.0 O3' C:ATP902 3.0 37.4 1.0 O C:ALA132 3.5 27.6 1.0 CG C:ASP36 3.6 48.7 1.0 CG C:ASP137 3.6 32.0 1.0 O C:HOH930 3.6 47.8 1.0 NE2 C:HIS134 3.7 21.8 1.0 OD2 C:ASP137 3.7 33.8 1.0 CD2 C:HIS134 3.8 23.2 1.0 C C:ALA132 4.0 27.6 1.0 C3' C:ATP902 4.0 37.2 1.0 O C:HOH931 4.1 31.0 1.0 CB C:ASP36 4.2 41.0 1.0 CB C:ALA132 4.3 26.9 1.0 N C:HIS133 4.4 26.6 1.0 CA C:HIS133 4.4 25.3 1.0 C5' C:ATP902 4.5 48.1 1.0 OD2 C:ASP36 4.5 53.4 1.0 O2A C:ATP902 4.6 61.4 1.0 CE1 C:HIS134 4.6 26.8 1.0 O5' C:ATP902 4.7 58.8 1.0 CA C:ALA132 4.7 27.0 1.0 C4' C:ATP902 4.8 41.4 1.0 CG C:HIS134 4.8 25.0 1.0 N C:HIS134 4.9 28.3 1.0

M.Kuratani, Y.Yoshikawa, Y.Bessho, K.Higashijima, T.Ishii, R.Shibata, S.Takahashi, K.Yutani, S.Yokoyama. Structural Basis of the Initial Binding of Trna(Ile) Lysidine Synthetase Tils with Atp and L-Lysine To Be Published.