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Magnesium in PDB 2e94: S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364

Enzymatic activity of S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364

All present enzymatic activity of S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364:
2.5.1.30;

Protein crystallography data

The structure of S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364, PDB code: 2e94 was solved by R.T.Guo, T.P.Ko, R.Cao, C.K.-M.Chen, W.Y.Jeng, T.H.Chang, P.H.Liang, E.Oldfield, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.50 / 2.18
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.570, 116.393, 128.545, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 23.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364 (pdb code 2e94). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364, PDB code: 2e94:

Magnesium binding site 1 out of 1 in 2e94

Go back to Magnesium Binding Sites List in 2e94
Magnesium binding site 1 out of 1 in the S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with Magnesium and Bph-364 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1201

b:55.1
occ:1.00
 OD2 A:ASP84 2.3 36.8 1.0
OAA A:3641101 2.4 52.5 1.0
OAF A:3641101 2.5 52.8 1.0
O A:HOH601 2.6 50.2 1.0
OD1 A:ASP80 2.7 44.8 1.0
O A:HOH776 2.7 72.0 1.0
OD2 A:ASP80 3.0 46.4 1.0
CG A:ASP80 3.2 39.9 1.0
CG A:ASP84 3.3 33.9 1.0
OD1 A:ASP84 3.4 35.0 1.0
PBB A:3641101 3.7 52.2 1.0
PBC A:3641101 3.8 55.1 1.0
O A:HOH506 4.1 26.9 1.0
NZ A:LYS238 4.2 43.0 1.0
CBA A:3641101 4.2 54.7 1.0
OAD A:3641101 4.5 53.9 1.0
CAU A:3641101 4.5 56.4 1.0
OAB A:3641101 4.6 54.1 1.0
CB A:ASP84 4.7 28.1 1.0
CB A:ASP80 4.7 31.1 1.0
NE2 A:GLN147 4.9 38.4 1.0
OE1 A:GLN147 4.9 42.0 1.0
OAE A:3641101 5.0 52.6 1.0
OAG A:3641101 5.0 55.2 1.0
OE2 A:GLU236 5.0 34.8 1.0

Reference:

R.T.Guo, R.Cao, P.H.Liang, T.P.Ko, T.H.Chang, M.P.Hudock, W.Y.Jeng, C.K.-M.Chen, Y.Zhang, Y.Song, C.J.Kuo, F.Yin, E.Oldfield, A.H.-J.Wang. Bisphosphonates Target Multiple Sites in Both Cis- and Trans-Prenyltransferases Proc.Natl.Acad.Sci.Usa V. 104 10022 2007.
ISSN: ISSN 0027-8424
PubMed: 17535895
DOI: 10.1073/PNAS.0702254104
Page generated: Sun Aug 10 10:35:44 2025

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