Magnesium in PDB 2evx: Crystal Structure of Pumpkin Seed Globulin

The structure of Crystal Structure of Pumpkin Seed Globulin, PDB code: 2evx was solved by T.Itoh, T.Fukuda, B.Mikami, S.Utsumi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.97 / 2.60
Space group	F 2 3
Cell size a, b, c (Å), α, β, γ (°)	189.290, 189.290, 189.290, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25.5

The binding sites of Magnesium atom in the Crystal Structure of Pumpkin Seed Globulin (pdb code 2evx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Pumpkin Seed Globulin, PDB code: 2evx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Pumpkin Seed Globulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pumpkin Seed Globulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:47.9 occ:1.00 CB A:SER345 3.3 32.5 1.0 NZ A:LYS387 3.5 30.0 1.0 CG1 A:ILE379 3.8 29.2 1.0 CB A:MET347 4.0 20.0 1.0 OG A:SER345 4.0 55.8 1.0 O A:SER345 4.2 32.0 1.0 CB A:ALA398 4.2 32.9 1.0 O A:HOH1051 4.3 41.7 1.0 CE A:MET347 4.3 45.3 1.0 NZ A:LYS400 4.3 32.0 1.0 CB A:ILE379 4.4 33.9 1.0 C A:SER345 4.5 27.1 1.0 CA A:SER345 4.5 25.2 1.0 CE A:LYS387 4.7 41.7 1.0 SD A:MET347 4.7 41.6 1.0 CG A:MET347 4.8 34.8 1.0 MG A:MG502 4.9 28.1 1.0 N A:MET347 4.9 34.2 1.0 CA A:MET347 4.9 31.5 1.0 CD1 A:ILE379 5.0 36.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Pumpkin Seed Globulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pumpkin Seed Globulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:28.1 occ:1.00 NZ A:LYS387 3.0 30.0 1.0 NH1 A:ARG447 3.2 64.5 1.0 O A:HOH1051 3.2 41.7 1.0 CE A:LYS387 3.4 41.7 1.0 NE2 A:HIS338 3.5 26.9 1.0 CG1 A:VAL335 3.5 29.6 1.0 CE1 A:HIS338 3.7 27.9 1.0 CZ2 A:TRP396 4.0 28.6 1.0 CD1 A:ILE306 4.3 28.4 1.0 CG2 A:VAL335 4.4 38.6 1.0 CB A:VAL335 4.4 35.1 1.0 CZ A:ARG447 4.4 70.1 1.0 CE2 A:TRP396 4.6 19.2 1.0 CD2 A:HIS338 4.7 24.4 1.0 NE1 A:TRP396 4.7 17.0 1.0 OE2 A:GLU325 4.8 39.1 1.0 ND1 A:HIS338 4.8 31.6 1.0 CH2 A:TRP396 4.8 36.8 1.0 MG A:MG501 4.9 47.9 1.0 CD A:LYS387 4.9 56.5 1.0

T.Itoh, T.Fukuda, B.Mikami, S.Utsumi. Crystal Structure of Pumpkin Seed Globulin To Be Published.