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Magnesium in PDB 2fuv: Phosphoglucomutase From Salmonella Typhimurium.

Enzymatic activity of Phosphoglucomutase From Salmonella Typhimurium.

All present enzymatic activity of Phosphoglucomutase From Salmonella Typhimurium.:
5.4.2.2;

Protein crystallography data

The structure of Phosphoglucomutase From Salmonella Typhimurium., PDB code: 2fuv was solved by J.Osipiuk, R.Wu, D.Holzle, F.Collart, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.33 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.658, 104.864, 125.955, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 20

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phosphoglucomutase From Salmonella Typhimurium. (pdb code 2fuv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Phosphoglucomutase From Salmonella Typhimurium., PDB code: 2fuv:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 2fuv

Go back to Magnesium Binding Sites List in 2fuv
Magnesium binding site 1 out of 3 in the Phosphoglucomutase From Salmonella Typhimurium.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phosphoglucomutase From Salmonella Typhimurium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:15.2
occ:1.00
OG A:SER146 2.2 24.2 1.0
O A:HOH1054 2.2 30.4 1.0
OD1 A:ASP308 2.2 26.1 1.0
OD2 A:ASP304 2.2 18.1 1.0
OD2 A:ASP306 2.4 23.4 1.0
OD1 A:ASP306 2.4 24.7 1.0
CG A:ASP306 2.8 21.1 1.0
CG A:ASP308 3.2 23.8 1.0
CG A:ASP304 3.2 20.6 1.0
CB A:SER146 3.4 22.1 1.0
O A:HOH951 3.5 34.2 1.0
OD2 A:ASP308 3.6 24.6 1.0
OD1 A:ASP304 3.8 21.9 1.0
CA A:SER146 4.0 22.8 1.0
CG A:ARG309 4.1 22.7 1.0
NE A:ARG309 4.1 31.4 1.0
O A:HOH1137 4.2 47.8 1.0
CB A:ASP304 4.3 17.5 1.0
CB A:ASP306 4.3 19.2 1.0
CD A:ARG309 4.4 23.8 1.0
CB A:ASP308 4.5 22.2 1.0
N A:HIS147 4.6 21.3 1.0
O A:HOH1015 4.6 27.2 1.0
C A:SER146 4.7 22.5 1.0
N A:ASP308 4.8 21.1 1.0
N A:ARG309 4.9 21.7 1.0
CB A:ARG309 4.9 22.6 1.0
N A:ASP306 5.0 18.8 1.0

Magnesium binding site 2 out of 3 in 2fuv

Go back to Magnesium Binding Sites List in 2fuv
Magnesium binding site 2 out of 3 in the Phosphoglucomutase From Salmonella Typhimurium.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Phosphoglucomutase From Salmonella Typhimurium. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:14.6
occ:1.00
O B:HOH1219 2.1 30.4 1.0
OD2 B:ASP304 2.2 19.9 1.0
OG B:SER146 2.2 20.8 1.0
OD1 B:ASP308 2.2 26.0 1.0
OD2 B:ASP306 2.4 25.5 1.0
OD1 B:ASP306 2.4 26.4 1.0
CG B:ASP306 2.7 20.0 1.0
CG B:ASP304 3.2 20.8 1.0
CG B:ASP308 3.2 22.3 1.0
CB B:SER146 3.3 19.4 1.0
OD2 B:ASP308 3.6 25.3 1.0
O B:HOH977 3.6 32.9 1.0
OD1 B:ASP304 3.8 21.7 1.0
CD B:ARG309 3.8 25.3 1.0
CA B:SER146 4.0 19.2 1.0
CG B:ARG309 4.0 23.4 1.0
O B:HOH1153 4.2 38.8 1.0
CB B:ASP306 4.3 21.1 1.0
CB B:ASP304 4.3 19.1 1.0
CB B:ASP308 4.5 20.2 1.0
N B:HIS147 4.6 20.7 1.0
O B:HOH1002 4.6 21.9 1.0
C B:SER146 4.7 20.3 1.0
N B:ASP308 4.7 19.5 1.0
N B:ARG309 4.7 21.9 1.0
CB B:ARG309 4.8 22.2 1.0
NH1 B:ARG309 4.9 33.2 1.0
O B:HOH968 4.9 22.5 1.0
N B:ASP306 4.9 20.1 1.0
CA B:ASP308 5.0 20.8 1.0

Magnesium binding site 3 out of 3 in 2fuv

Go back to Magnesium Binding Sites List in 2fuv
Magnesium binding site 3 out of 3 in the Phosphoglucomutase From Salmonella Typhimurium.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Phosphoglucomutase From Salmonella Typhimurium. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:32.6
occ:1.00
O B:HOH1348 2.0 38.7 1.0
O B:HOH1313 2.1 32.0 1.0
O B:HOH1191 2.1 33.5 1.0
O B:HOH1314 2.1 36.0 1.0
O B:HOH1025 2.2 21.2 1.0
O B:HOH1062 2.3 30.3 1.0
O B:HOH1010 3.9 24.1 1.0
OD1 B:ASP378 3.9 24.0 1.0
OD2 B:ASP378 4.2 28.6 1.0
OD2 B:ASP166 4.3 30.3 1.0
O B:HOH997 4.3 26.5 1.0
CB B:ASP166 4.4 24.4 1.0
O B:HOH969 4.4 21.1 1.0
ND2 B:ASN161 4.5 17.1 1.0
O B:HOH1225 4.5 50.9 1.0
CG B:ASP378 4.5 25.5 1.0
CG B:ASP166 4.9 26.4 1.0
O B:HOH1134 5.0 43.8 1.0

Reference:

J.Osipiuk, R.Wu, D.Holzle, F.Collart, A.Joachimiak. X-Ray Crystal Structure of Phosphoglucomutase From Salmonella Typhimurium. To Be Published.
Page generated: Tue Aug 13 23:18:34 2024

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