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Magnesium in PDB 2gsl: X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.

Protein crystallography data

The structure of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1., PDB code: 2gsl was solved by F.Forouhar, M.Su, S.Jayaraman, K.Conover, H.Janjua, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.304, 108.751, 80.495, 90.00, 108.59, 90.00
R / Rfree (%) 23 / 29.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. (pdb code 2gsl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1., PDB code: 2gsl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 2gsl

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Magnesium binding site 1 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:19.0
occ:1.00
 O A:HOH234 2.3 19.8 1.0
OE1 A:GLU103 2.3 22.0 1.0
O A:HOH236 2.3 23.1 1.0
O A:HOH235 2.4 32.3 1.0
OD1 A:ASP23 2.4 26.6 1.0
CD A:GLU103 3.0 20.4 1.0
OE2 A:GLU103 3.0 18.8 1.0
NE2 A:GLN57 3.2 22.2 1.0
CG A:ASP23 3.4 25.3 1.0
O A:HOH229 3.7 33.3 1.0
CB A:ASP23 4.1 24.4 1.0
OD2 A:ASP23 4.3 23.1 1.0
CG A:GLU103 4.3 16.0 1.0
O A:VAL52 4.3 25.4 1.0
CD A:GLN57 4.4 22.6 1.0
O A:HOH215 4.4 35.0 1.0
OE1 A:GLN57 4.6 24.8 1.0
CA A:ASP23 4.7 22.1 1.0
O A:HOH217 4.7 43.2 1.0

Magnesium binding site 2 out of 6 in 2gsl

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Magnesium binding site 2 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:14.8
occ:1.00
 OD1 B:ASP23 2.3 18.5 1.0
O B:HOH228 2.3 26.0 1.0
OE1 B:GLU103 2.4 34.6 1.0
O B:HOH227 2.4 26.8 1.0
O B:HOH230 2.6 22.2 1.0
O B:HOH229 2.7 17.6 1.0
OE2 B:GLU103 2.8 32.5 1.0
CD B:GLU103 3.0 33.1 1.0
CG B:ASP23 3.2 21.6 1.0
CB B:ASP23 3.4 20.7 1.0
OE1 B:GLN57 3.9 32.2 1.0
CA B:ASP23 4.1 20.0 1.0
O B:HOH213 4.2 24.5 1.0
OD2 B:ASP23 4.3 21.2 1.0
O B:HOH211 4.4 53.8 1.0
CG B:GLU103 4.5 31.8 1.0
NE2 B:GLN57 4.5 34.8 1.0
O B:VAL52 4.6 28.8 1.0
CD B:GLN57 4.6 34.2 1.0
C B:ASP23 5.0 19.1 1.0

Magnesium binding site 3 out of 6 in 2gsl

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Magnesium binding site 3 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg203

b:17.1
occ:1.00
 OD1 C:ASP23 2.2 20.4 1.0
OE1 C:GLU103 2.3 11.0 1.0
O C:HOH233 2.3 8.7 1.0
O C:HOH234 2.3 32.3 1.0
O C:HOH232 2.4 27.6 1.0
O C:HOH224 2.5 31.5 1.0
CD C:GLU103 3.1 13.3 1.0
OE2 C:GLU103 3.3 12.2 1.0
CG C:ASP23 3.3 20.1 1.0
NE2 C:GLN57 3.6 31.6 1.0
CB C:ASP23 3.9 19.7 1.0
OD2 C:ASP23 4.3 20.6 1.0
OE1 C:GLN57 4.4 31.7 1.0
CD C:GLN57 4.4 30.3 1.0
O C:HOH212 4.5 8.7 1.0
CA C:ASP23 4.5 18.6 1.0
O C:VAL52 4.5 23.2 1.0
CG C:GLU103 4.5 14.5 1.0

Magnesium binding site 4 out of 6 in 2gsl

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Magnesium binding site 4 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg204

b:12.5
occ:1.00
 OE1 D:GLU103 2.4 24.7 1.0
O D:HOH221 2.4 49.4 1.0
OD1 D:ASP23 2.5 15.4 1.0
O D:HOH224 2.5 34.5 1.0
O D:HOH223 2.5 16.0 1.0
O D:HOH222 2.5 23.7 1.0
CD D:GLU103 3.3 27.2 1.0
OE2 D:GLU103 3.5 28.7 1.0
CG D:ASP23 3.6 21.0 1.0
OE1 D:GLN57 3.7 26.8 1.0
NE2 D:GLN57 3.8 27.1 1.0
O D:HOH208 4.1 17.3 1.0
CD D:GLN57 4.2 27.0 1.0
O D:VAL52 4.2 25.1 1.0
CB D:ASP23 4.3 20.1 1.0
OD2 D:ASP23 4.6 21.8 1.0
O D:HOH212 4.7 13.9 1.0
CG D:GLU103 4.7 26.4 1.0
CA D:ASP23 4.9 18.8 1.0

Magnesium binding site 5 out of 6 in 2gsl

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Magnesium binding site 5 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg205

b:22.1
occ:1.00
 O E:HOH234 2.3 45.5 1.0
OE1 E:GLU103 2.3 17.9 1.0
O E:HOH231 2.4 21.6 1.0
OD1 E:ASP23 2.5 33.5 1.0
O E:HOH232 2.6 32.8 1.0
O E:HOH233 2.6 37.2 1.0
NE2 E:GLN57 3.1 20.9 1.0
CD E:GLU103 3.3 20.6 1.0
CG E:ASP23 3.4 33.5 1.0
OE2 E:GLU103 3.7 21.1 1.0
O E:VAL52 4.1 26.1 1.0
O E:HOH217 4.1 27.3 1.0
CD E:GLN57 4.2 25.2 1.0
OD2 E:ASP23 4.2 36.0 1.0
CB E:ASP23 4.2 28.5 1.0
OE1 E:GLN57 4.5 22.8 1.0
O E:HOH215 4.5 53.9 1.0
CG E:GLU103 4.6 20.1 1.0
O E:HOH218 4.7 40.7 1.0
CA E:ASP23 4.8 24.4 1.0
CG1 E:VAL52 5.0 23.3 1.0

Magnesium binding site 6 out of 6 in 2gsl

Go back to Magnesium Binding Sites List in 2gsl
Magnesium binding site 6 out of 6 in the X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of X-Ray Crystal Structure of Protein FN1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target NR1. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg206

b:17.3
occ:1.00
 O F:HOH239 2.2 11.3 1.0
O F:HOH236 2.2 18.6 1.0
O F:HOH237 2.3 15.0 1.0
O F:HOH238 2.3 27.7 1.0
OE1 F:GLU103 2.3 10.0 1.0
OD1 F:ASP23 2.5 22.2 1.0
CD F:GLU103 3.3 13.2 1.0
CG F:ASP23 3.4 21.7 1.0
NE2 F:GLN57 3.6 24.7 1.0
OE2 F:GLU103 3.7 17.0 1.0
CB F:ASP23 3.8 18.7 1.0
OE1 F:GLN57 4.1 26.0 1.0
O F:HOH219 4.2 36.5 1.0
O F:HOH217 4.2 20.9 1.0
CD F:GLN57 4.3 27.3 1.0
O F:VAL52 4.5 25.6 1.0
OD2 F:ASP23 4.5 25.5 1.0
CA F:ASP23 4.6 19.0 1.0
CG F:GLU103 4.7 11.0 1.0
O F:HOH218 4.8 20.4 1.0

Reference:

F.Forouhar, M.Su, S.Jayaraman, K.Conover, H.Janjua, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the Hypothetical Protein (FN1578) From Fusobacterium Nucleatum, Nesg Target NR1 To Be Published.
Page generated: Sun Aug 10 11:11:19 2025

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