Magnesium in PDB 2h5n: Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83

The structure of Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83, PDB code: 2h5n was solved by B.Nocek, L.Bigelow, S.Moy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.01
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	79.961, 84.826, 164.535, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 24.4

The binding sites of Magnesium atom in the Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83 (pdb code 2h5n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83, PDB code: 2h5n:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:47.1 occ:1.00 OD1 A:ASP32 2.1 26.6 1.0 O A:LYS34 2.3 29.1 1.0 O A:VAL29 2.4 24.6 1.0 O A:HOH1026 3.2 42.0 1.0 CG A:ASP32 3.2 26.3 1.0 O A:HOH1074 3.3 31.5 1.0 C A:LYS34 3.3 29.0 1.0 C A:VAL29 3.7 23.4 1.0 N A:LYS34 3.7 27.9 1.0 OD2 A:ASP32 3.7 29.1 1.0 CA A:LYS34 3.9 28.5 1.0 CB A:LYS34 4.0 28.4 1.0 OE1 A:GLU39 4.4 25.5 1.0 N A:ILE35 4.4 30.2 1.0 CB A:ASP32 4.5 25.7 1.0 N A:GLY33 4.5 26.6 1.0 N A:ASP32 4.5 25.7 1.0 CA A:VAL29 4.5 22.6 1.0 N A:MET30 4.6 24.6 1.0 CA A:MET30 4.6 27.0 1.0 O A:HOH1043 4.6 41.5 1.0 C A:ASP32 4.6 26.2 1.0 C A:MET30 4.7 25.8 1.0 CA A:ILE35 4.7 31.2 1.0 CA A:ASP32 4.7 26.2 1.0 C A:GLY33 4.8 27.5 1.0 N A:LYS36 4.9 30.3 1.0 CB A:VAL29 5.0 22.4 1.0 O A:MET30 5.0 26.9 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:27.6 occ:1.00 O B:HOH1045 2.1 31.3 1.0 O B:VAL29 2.2 23.3 1.0 O B:LYS34 2.2 27.6 1.0 OD1 B:ASP32 2.2 26.7 1.0 O B:HOH1018 3.0 29.9 1.0 CG B:ASP32 3.1 26.0 1.0 O B:HOH1085 3.2 30.5 1.0 C B:VAL29 3.2 22.1 1.0 C B:LYS34 3.3 27.1 1.0 OD2 B:ASP32 3.4 29.5 1.0 CA B:VAL29 3.8 20.8 1.0 N B:LYS34 3.8 26.4 1.0 CA B:LYS34 4.0 27.7 1.0 O B:HOH1084 4.1 36.9 1.0 OE1 B:GLU39 4.2 25.4 1.0 CB B:LYS34 4.3 27.7 1.0 N B:MET30 4.3 23.5 1.0 CB B:ASP32 4.3 24.4 1.0 CB B:VAL29 4.4 21.1 1.0 N B:ASP32 4.4 24.3 1.0 N B:ILE35 4.4 26.9 1.0 CA B:MET30 4.7 24.4 1.0 CD1 B:ILE35 4.7 26.3 1.0 O B:HOH1083 4.7 43.7 1.0 CA B:ASP32 4.7 25.0 1.0 N B:GLY33 4.7 25.1 1.0 CA B:ILE35 4.8 26.2 1.0 O B:MET28 4.8 17.6 1.0 C B:MET30 4.8 24.0 1.0 C B:ASP32 4.9 24.8 1.0 N B:ALA31 4.9 23.3 1.0 C B:GLY33 5.0 26.7 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Protein of Unknown Function PG1108 From Porphyromonas Gingivalis W83 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:31.5 occ:1.00 OD1 C:ASP32 2.2 26.7 1.0 O C:VAL29 2.2 25.0 1.0 O C:LYS34 2.3 29.2 1.0 O C:HOH1003 2.4 34.1 1.0 O C:HOH1009 2.7 36.3 1.0 CG C:ASP32 3.1 26.5 1.0 C C:LYS34 3.3 29.2 1.0 O C:HOH1010 3.3 24.2 1.0 C C:VAL29 3.4 22.1 1.0 OD2 C:ASP32 3.4 26.7 1.0 N C:LYS34 4.0 27.9 1.0 OE1 C:GLU39 4.0 23.6 1.0 CA C:LYS34 4.0 29.1 1.0 CB C:LYS34 4.3 28.9 1.0 CA C:VAL29 4.3 20.4 1.0 N C:ILE35 4.3 29.8 1.0 N C:MET30 4.3 22.3 0.5 CA C:MET30 4.3 22.6 0.5 N C:MET30 4.3 22.6 0.5 O C:HOH1044 4.4 37.3 1.0 CA C:MET30 4.5 23.3 0.5 N C:LYS36 4.5 26.9 1.0 CB C:ASP32 4.5 26.3 1.0 CA C:ILE35 4.5 29.4 1.0 C C:MET30 4.7 23.0 0.5 N C:ASP32 4.7 25.0 1.0 CB C:VAL29 4.7 20.1 1.0 C C:ILE35 4.7 28.2 1.0 CE C:MET30 4.8 24.5 0.5 C C:MET30 4.8 22.7 0.5 SD C:MET30 4.8 24.9 0.5 N C:GLY33 4.8 26.8 1.0 CA C:ASP32 4.9 25.7 1.0 C C:ASP32 5.0 26.1 1.0

B.Nocek, L.Bigelow, S.Moy, A.Joachimiak. Crystal Structure of Hypothetical Protein PG_1108 From Porphyromonas Gingivalis W83 To Be Published.