Atomistry » Magnesium » PDB 2hld-2hxf » 2hne
Atomistry »
  Magnesium »
    PDB 2hld-2hxf »
      2hne »

Magnesium in PDB 2hne: Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

Enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

All present enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913:
4.2.1.68;

Protein crystallography data

The structure of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne was solved by A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burley, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.68 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.633, 130.633, 195.829, 90.00, 90.00, 120.00
R / Rfree (%) 24.1 / 27.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 (pdb code 2hne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 1 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:31.0
occ:1.00
 OE1 A:GLU301 2.2 32.7 1.0
OD2 A:ASP248 2.2 28.0 1.0
OE2 A:GLU274 2.2 28.9 1.0
O A:HOH675 2.2 24.5 1.0
O A:HOH676 2.4 34.1 1.0
O A:HOH677 2.4 36.8 1.0
CD A:GLU301 3.1 34.6 1.0
CD A:GLU274 3.2 27.3 1.0
CG A:ASP248 3.2 25.1 1.0
OE2 A:GLU301 3.4 35.9 1.0
OD1 A:ASP248 3.5 22.8 1.0
CG A:GLU274 3.7 26.9 1.0
NZ A:LYS218 3.8 38.4 1.0
OD1 A:ASN250 4.2 32.8 1.0
OE1 A:GLU274 4.2 30.2 1.0
OE2 A:GLU275 4.3 30.5 1.0
O A:HOH602 4.4 28.8 1.0
CG A:GLU301 4.4 31.9 1.0
ND1 A:HIS351 4.5 34.6 1.0
CB A:ASP248 4.5 23.6 1.0
CE A:LYS218 4.6 30.1 1.0
CB A:GLU274 4.8 24.9 1.0
CE1 A:HIS351 4.8 33.8 1.0
CG A:GLU275 4.9 28.3 1.0
CG A:ASN250 5.0 32.2 1.0

Magnesium binding site 2 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 2 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:31.4
occ:1.00
 OE1 B:GLU301 2.2 29.1 1.0
OD2 B:ASP248 2.2 20.8 1.0
O B:HOH693 2.2 26.5 1.0
O B:HOH692 2.3 34.3 1.0
O B:HOH691 2.3 23.7 1.0
OE2 B:GLU274 2.3 29.2 1.0
CD B:GLU301 2.9 29.9 1.0
OE2 B:GLU301 3.0 29.1 1.0
CG B:ASP248 3.2 23.9 1.0
CD B:GLU274 3.4 30.5 1.0
OD1 B:ASP248 3.5 22.7 1.0
NZ B:LYS220 3.6 27.6 1.0
CG B:GLU274 4.1 29.3 1.0
OD1 B:ASN250 4.1 30.3 1.0
ND1 B:HIS351 4.2 31.5 1.0
CG B:GLU301 4.3 28.3 1.0
O B:HOH610 4.3 26.1 1.0
OE2 B:GLU275 4.3 30.5 1.0
NZ B:LYS218 4.3 34.0 1.0
OE1 B:GLU274 4.4 29.3 1.0
CB B:ASP248 4.5 22.4 1.0
CE1 B:HIS351 4.5 29.2 1.0
O B:HOH629 4.8 41.8 1.0
CG B:ASN250 4.8 28.6 1.0
CB B:GLU301 4.9 28.1 1.0
ND2 B:ASN250 5.0 21.8 1.0
CB B:GLU274 5.0 27.0 1.0

Magnesium binding site 3 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 3 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg603

b:37.3
occ:1.00
 OE1 C:GLU301 2.2 27.1 1.0
OD2 C:ASP248 2.2 26.5 1.0
OE2 C:GLU274 2.3 33.1 1.0
O C:HOH665 2.3 34.1 1.0
O C:HOH664 2.4 30.0 1.0
O C:HOH666 2.5 41.9 1.0
CD C:GLU301 3.0 32.1 1.0
OE2 C:GLU301 3.3 32.9 1.0
CG C:ASP248 3.3 27.1 1.0
CD C:GLU274 3.4 33.0 1.0
NZ C:LYS220 3.8 38.6 1.0
OD1 C:ASP248 3.8 25.8 1.0
NZ C:LYS218 3.9 35.4 1.0
CG C:GLU274 4.1 32.3 1.0
OD1 C:ASN250 4.1 33.3 1.0
ND1 C:HIS351 4.1 41.5 1.0
OE1 C:GLU274 4.2 34.8 1.0
OE2 C:GLU275 4.3 35.5 1.0
CE1 C:HIS351 4.3 40.4 1.0
CG C:GLU301 4.3 32.1 1.0
O C:HOH652 4.5 33.8 1.0
CB C:ASP248 4.6 25.0 1.0
CE C:LYS218 4.8 34.5 1.0
CG C:ASN250 4.9 29.1 1.0

Magnesium binding site 4 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 4 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg604

b:56.1
occ:1.00
 OD2 D:ASP248 2.2 34.4 1.0
OE1 D:GLU301 2.2 40.9 1.0
O D:HOH668 2.3 34.5 1.0
O D:HOH669 2.3 43.2 1.0
OE2 D:GLU274 2.5 34.9 1.0
O D:HOH667 2.6 44.7 1.0
CD D:GLU301 3.0 37.7 1.0
OE2 D:GLU301 3.2 40.4 1.0
CG D:ASP248 3.3 34.4 1.0
NZ D:LYS220 3.5 39.2 1.0
CD D:GLU274 3.6 33.7 1.0
NZ D:LYS218 3.8 39.7 1.0
OD1 D:ASP248 3.8 33.9 1.0
ND1 D:HIS351 4.0 34.6 1.0
CE1 D:HIS351 4.1 33.2 1.0
OE1 D:GLU274 4.4 34.9 1.0
CG D:GLU274 4.4 31.6 1.0
CG D:GLU301 4.4 36.7 1.0
CB D:ASP248 4.5 33.8 1.0
OD1 D:ASN250 4.5 37.0 1.0
OE2 D:GLU382 4.8 43.9 1.0
O D:HOH613 4.8 29.2 1.0
CE D:LYS220 4.9 38.7 1.0
OE2 D:GLU275 4.9 41.1 1.0
CE D:LYS218 4.9 40.5 1.0
ND2 D:ASN250 5.0 33.2 1.0
CB D:GLU301 5.0 31.1 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo. Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 To Be Published.
Page generated: Tue Aug 13 23:54:41 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy