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Magnesium in PDB 2ho4: Crystal Structure of Protein From Mouse Mm.236127

Protein crystallography data

The structure of Crystal Structure of Protein From Mouse Mm.236127, PDB code: 2ho4 was solved by J.G.Mccoy, G.E.Wesenberg, E.Bitto, G.N.Phillips Jr., C.A.Bingman, Centerfor Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.50 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.586, 68.078, 190.982, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 28.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Protein From Mouse Mm.236127 (pdb code 2ho4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Protein From Mouse Mm.236127, PDB code: 2ho4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2ho4

Go back to Magnesium Binding Sites List in 2ho4
Magnesium binding site 1 out of 2 in the Crystal Structure of Protein From Mouse Mm.236127


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Protein From Mouse Mm.236127 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg260

b:43.7
occ:0.60
O A:HOH446 2.2 36.3 1.0
OD2 A:ASP13 2.3 33.2 1.0
O A:ASN15 2.9 29.1 1.0
OD1 A:ASP13 2.9 26.3 1.0
CG A:ASP13 3.0 26.1 1.0
CB A:ASN15 3.4 26.6 1.0
ND2 A:ASN15 3.4 25.9 1.0
OD1 A:ASP204 3.4 30.5 1.0
C A:ASN15 3.7 26.7 1.0
CG A:ASN15 3.9 27.3 1.0
O A:HOH472 3.9 35.9 1.0
CA A:ASN15 3.9 26.4 1.0
N A:ASN15 4.0 25.3 1.0
O A:HOH451 4.1 43.5 1.0
CG A:ASP204 4.4 26.0 1.0
CB A:ASP13 4.4 22.8 1.0
OD2 A:ASP209 4.5 18.5 1.0
OD2 A:ASP204 4.5 25.5 1.0
NZ A:LYS179 4.7 23.1 1.0
CE A:LYS227 4.9 32.1 1.0
N A:GLY16 4.9 26.0 1.0

Magnesium binding site 2 out of 2 in 2ho4

Go back to Magnesium Binding Sites List in 2ho4
Magnesium binding site 2 out of 2 in the Crystal Structure of Protein From Mouse Mm.236127


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Protein From Mouse Mm.236127 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:44.2
occ:1.00
O B:HOH461 1.9 69.0 1.0
OD2 B:ASP13 2.1 22.5 1.0
O B:HOH459 2.2 29.0 0.5
OD1 B:ASP204 2.2 30.1 1.0
O B:ASN15 2.3 23.6 1.0
CG B:ASP204 3.3 26.0 1.0
CG B:ASP13 3.3 22.9 1.0
O1 B:PO4401 3.4 49.0 0.8
C B:ASN15 3.5 23.2 1.0
O4 B:PO4401 3.7 50.2 0.8
OD2 B:ASP204 3.7 26.5 1.0
OD1 B:ASP13 4.0 20.7 1.0
OD2 B:ASP209 4.1 31.5 1.0
P B:PO4401 4.1 52.5 0.8
CA B:ASN15 4.4 22.9 1.0
CB B:ASN15 4.4 23.1 1.0
CB B:ASP13 4.5 22.6 1.0
N B:GLY16 4.5 22.9 1.0
CE B:LYS227 4.5 34.8 1.0
CA B:GLY16 4.5 22.3 1.0
CB B:ASP204 4.6 25.7 1.0
N B:ASN15 4.6 23.5 1.0
N B:ASP204 4.7 24.0 1.0
O2 B:PO4401 4.7 47.2 0.8
N B:ASP205 4.9 27.2 1.0
OG1 B:THR17 5.0 24.9 1.0
NZ B:LYS179 5.0 28.4 1.0
CG B:ASP209 5.0 32.6 1.0

Reference:

J.G.Mccoy, G.E.Wesenberg, E.Bitto, G.N.Phillips Jr., C.A.Bingman. Crystal Structure of Protein From Mouse Mm.236127 To Be Published.
Page generated: Tue Aug 13 23:55:06 2024

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