Magnesium in PDB 2hxf: KIF1A Head-Microtubule Complex Structure in Amppnp-Form

The binding sites of Magnesium atom in the KIF1A Head-Microtubule Complex Structure in Amppnp-Form (pdb code 2hxf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the KIF1A Head-Microtubule Complex Structure in Amppnp-Form, PDB code: 2hxf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the KIF1A Head-Microtubule Complex Structure in Amppnp-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KIF1A Head-Microtubule Complex Structure in Amppnp-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:18.6 occ:1.00 O1G A:GTP500 2.4 28.7 1.0 CB A:GLN11 3.1 23.6 1.0 O1B A:GTP500 3.2 41.2 1.0 OE2 A:GLU71 3.3 47.9 1.0 PG A:GTP500 3.7 30.0 1.0 O3B A:GTP500 3.7 35.2 1.0 N A:GLN11 3.8 25.1 1.0 OD2 A:ASP69 3.8 33.2 1.0 PB A:GTP500 3.8 41.4 1.0 OD1 A:ASP69 3.9 31.7 1.0 CA A:GLN11 3.9 23.8 1.0 O3A A:GTP500 4.1 39.2 1.0 CG A:GLN11 4.2 24.7 1.0 CD A:GLN11 4.2 29.2 1.0 CG A:ASP69 4.3 34.8 1.0 CB A:GLU71 4.3 46.4 1.0 CG2 A:VAL74 4.3 61.8 1.0 CD A:GLU71 4.4 48.7 1.0 OE1 A:GLN11 4.4 33.8 1.0 O2A A:GTP500 4.4 44.5 1.0 O2G A:GTP500 4.5 35.0 1.0 CB A:ALA99 4.6 35.5 1.0 NE2 A:GLN11 4.7 29.5 1.0 PA A:GTP500 4.8 41.3 1.0 O3G A:GTP500 4.9 32.1 1.0 CG A:GLU71 5.0 49.1 1.0 OD1 B:ASN249 5.0 37.8 1.0 C A:GLY10 5.0 28.3 1.0

Magnesium binding site 2 out of 2 in the KIF1A Head-Microtubule Complex Structure in Amppnp-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KIF1A Head-Microtubule Complex Structure in Amppnp-Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1501 b:36.6 occ:1.00 OG C:SER104 2.1 20.9 1.0 O2G C:ANP1500 2.3 32.1 1.0 O1B C:ANP1500 2.4 21.5 1.0 CB C:SER104 3.2 23.8 1.0 PB C:ANP1500 3.3 25.3 1.0 PG C:ANP1500 3.5 34.1 1.0 N3B C:ANP1500 3.5 24.7 1.0 N C:SER104 3.8 19.4 1.0 OD2 C:ASP248 4.0 24.7 1.0 CA C:SER104 4.0 18.5 1.0 O3A C:ANP1500 4.2 20.5 1.0 OD1 C:ASP248 4.2 24.3 1.0 OG C:SER215 4.3 51.5 1.0 PA C:ANP1500 4.3 32.8 1.0 O3G C:ANP1500 4.3 38.4 1.0 O1G C:ANP1500 4.5 38.8 1.0 CG C:ASP248 4.5 27.0 1.0 CE C:LYS103 4.6 21.7 1.0 O1A C:ANP1500 4.7 31.0 1.0 O2B C:ANP1500 4.7 28.0 1.0 O C:LEU249 4.7 22.7 1.0 CB C:LYS103 4.7 18.6 1.0 CB C:SER215 4.9 61.6 1.0 C C:LYS103 4.9 21.6 1.0 NZ C:LYS103 5.0 26.3 1.0

M.Kikkawa, N.Hirokawa. High-Resolution Cryo-Em Maps Show the Nucleotide Binding Pocket of KIF1A in Open and Closed Conformations Embo J. V. 25 4187 2006.
ISSN: ISSN 0261-4189
PubMed: 16946706
DOI: 10.1038/SJ.EMBOJ.7601299