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Magnesium in PDB 2ibd: Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900

Protein crystallography data

The structure of Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900, PDB code: 2ibd was solved by C.Chang, E.Evdokimova, O.Kagan, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 70.588, 118.778, 97.173, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900 (pdb code 2ibd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900, PDB code: 2ibd:

Magnesium binding site 1 out of 1 in 2ibd

Go back to Magnesium Binding Sites List in 2ibd
Magnesium binding site 1 out of 1 in the Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:22.8
occ:1.00
O A:HOH208 1.9 35.6 1.0
O A:HOH289 2.0 26.8 1.0
O A:HOH228 2.1 22.0 1.0
O B:HOH378 2.1 27.8 1.0
O A:HOH276 2.2 26.9 1.0
OE1 A:GLU29 4.1 19.5 1.0
O A:HOH244 4.1 23.7 1.0
OE2 A:GLU29 4.2 20.9 1.0
O A:ARG174 4.3 18.0 1.0
O B:HOH387 4.3 29.0 1.0
O A:HOH267 4.4 26.2 1.0
NZ B:LYS117 4.5 26.1 1.0
CD A:GLU29 4.6 20.3 1.0
CE B:LYS117 4.8 26.7 1.0

Reference:

C.Chang, E.Evdokimova, O.Kagan, A.Savchenko, A.M.Edwards, A.Joachimiak. Crystal Structure of Probable Transcriptional Regulatory Protein RHA5900 To Be Published.
Page generated: Sun Aug 10 11:33:25 2025

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