Magnesium in PDB 2mis: uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions

The binding sites of Magnesium atom in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions (pdb code 2mis). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions, PDB code: 2mis:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:0.0 occ:1.00 O A:HOH203 1.8 0.0 1.0 O A:HOH205 1.8 0.0 1.0 O A:HOH201 1.8 0.0 1.0 O A:HOH202 1.8 0.0 1.0 O A:HOH204 1.8 0.0 1.0 OP1 A:A15 2.3 0.0 1.0 P A:A15 3.0 0.0 1.0 O5' A:A15 3.1 0.0 1.0 OP2 A:A15 3.4 0.0 1.0 H5'' A:A15 3.4 0.0 1.0 C2 A:G13 3.6 0.0 1.0 N2 A:G13 3.6 0.0 1.0 H21 A:G13 3.8 0.0 1.0 C5' A:A15 3.8 0.0 1.0 N1 A:G13 3.8 0.0 1.0 OP2 A:A16 3.9 0.0 1.0 H22 A:G13 3.9 0.0 1.0 H1 A:G13 4.0 0.0 1.0 N3 A:G13 4.0 0.0 1.0 H3' A:A15 4.1 0.0 1.0 H5' A:A15 4.4 0.0 1.0 O3' A:A14 4.5 0.0 1.0 C6 A:G13 4.5 0.0 1.0 C4 A:G13 4.6 0.0 1.0 C5 A:G13 4.8 0.0 1.0 H2' A:G13 4.9 0.0 1.0 C3' A:A15 4.9 0.0 1.0 C4' A:A15 5.0 0.0 1.0

Magnesium binding site 2 out of 5 in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:0.0 occ:1.00 O A:HOH210 1.8 0.0 1.0 O A:HOH211 1.8 0.0 1.0 O A:HOH208 1.8 0.0 1.0 O A:HOH206 1.8 0.0 1.0 O A:HOH209 1.8 0.0 1.0 O A:HOH207 1.8 0.0 1.0 H42 A:C10 3.0 0.0 1.0 H41 A:C10 3.4 0.0 1.0 N4 A:C10 3.5 0.0 1.0 H61 A:A11 3.6 0.0 1.0 H62 A:A11 3.7 0.0 1.0 O4 A:U18 3.7 0.0 1.0 N6 A:A11 3.9 0.0 1.0 O6 A:G19 4.5 0.0 1.0 C4 A:C10 4.6 0.0 1.0 C4 A:U18 4.7 0.0 1.0 O6 A:G17 4.7 0.0 1.0 H41 A:C12 5.0 0.0 1.0 H5 A:C10 5.0 0.0 1.0

Magnesium binding site 3 out of 5 in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg103 b:0.0 occ:1.00 O A:HOH214 1.8 0.0 1.0 O A:HOH216 1.8 0.0 1.0 O A:HOH215 1.8 0.0 1.0 O A:HOH213 1.8 0.0 1.0 O A:HOH212 1.8 0.0 1.0 OP2 A:G9 2.3 0.0 1.0 H3' A:A8 3.6 0.0 1.0 P A:G9 3.8 0.0 1.0 H5'' A:A8 3.8 0.0 1.0 OP1 A:C7 4.1 0.0 1.0 O5' A:C7 4.2 0.0 1.0 O5' A:G9 4.3 0.0 1.0 OP2 A:A8 4.4 0.0 1.0 C3' A:A8 4.4 0.0 1.0 P A:C7 4.4 0.0 1.0 OP2 A:C7 4.5 0.0 1.0 H5'' A:C7 4.6 0.0 1.0 H3' A:C7 4.6 0.0 1.0 C5' A:A8 4.6 0.0 1.0 O3' A:A8 4.7 0.0 1.0 OP1 A:G9 4.7 0.0 1.0 O5' A:A8 4.8 0.0 1.0 O3' A:C7 4.9 0.0 1.0 C4' A:A8 5.0 0.0 1.0 C5' A:C7 5.0 0.0 1.0 H4' A:A8 5.0 0.0 1.0

Magnesium binding site 4 out of 5 in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg104 b:0.0 occ:1.00 O A:HOH219 1.8 0.0 1.0 O A:HOH221 1.8 0.0 1.0 O A:HOH218 1.8 0.0 1.0 O A:HOH222 1.8 0.0 1.0 O A:HOH220 1.8 0.0 1.0 O A:HOH217 1.8 0.0 1.0 N7 A:G22 3.8 0.0 1.0 O6 A:G23 3.9 0.0 1.0 H41 A:C4 4.0 0.0 1.0 H2' A:C21 4.1 0.0 1.0 O6 A:G22 4.1 0.0 1.0 H42 A:C4 4.2 0.0 1.0 C4 A:C21 4.3 0.0 1.0 N3 A:C21 4.4 0.0 1.0 N4 A:C4 4.4 0.0 1.0 O A:HOH224 4.5 0.0 1.0 C5 A:C21 4.6 0.0 1.0 N4 A:C21 4.6 0.0 1.0 C2 A:C21 4.7 0.0 1.0 C5 A:G22 4.7 0.0 1.0 C6 A:G22 4.8 0.0 1.0 H41 A:C21 4.8 0.0 1.0 C8 A:G22 4.9 0.0 1.0 C6 A:G23 4.9 0.0 1.0 C6 A:C21 4.9 0.0 1.0 H1 A:G6 4.9 0.0 1.0 N1 A:C21 4.9 0.0 1.0 H42 A:C21 4.9 0.0 1.0 H8 A:G22 5.0 0.0 1.0 H5 A:C21 5.0 0.0 1.0

Magnesium binding site 5 out of 5 in the uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal Ion Interactions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg105 b:0.0 occ:1.00 O A:HOH228 1.8 0.0 1.0 O A:HOH227 1.8 0.0 1.0 O A:HOH225 1.8 0.0 1.0 O A:HOH224 1.8 0.0 1.0 O A:HOH226 1.8 0.0 1.0 O A:HOH223 1.8 0.0 1.0 H62 A:A2 3.7 0.0 1.0 O A:HOH217 4.3 0.0 1.0 N6 A:A2 4.6 0.0 1.0 N7 A:G1 4.8 0.0 1.0 N7 A:A2 4.8 0.0 1.0 O6 A:G3 4.9 0.0 1.0

E.Bonneau, P.Legault. uc(Nmr) Localization of Divalent Cations at the Active Site of the Neurospora Vs Ribozyme Provides Insights Into Rna-Metal-Ion Interactions. Biochemistry V. 53 579 2014.
ISSN: ISSN 0006-2960
PubMed: 24364590
DOI: 10.1021/BI401484A