Atomistry » Magnesium » PDB 2o56-2oh6 » 2o56
Atomistry »
  Magnesium »
    PDB 2o56-2oh6 »
      2o56 »

Magnesium in PDB 2o56: Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium

Protein crystallography data

The structure of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium, PDB code: 2o56 was solved by Y.Patskovsky, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.662, 140.818, 126.838, 90.00, 105.94, 90.00
R / Rfree (%) 20.9 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium (pdb code 2o56). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium, PDB code: 2o56:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 1 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:38.1
occ:1.00
OE2 A:GLU245 2.2 39.7 1.0
O A:HOH2200 2.2 49.6 1.0
OE1 A:GLU271 2.3 38.0 1.0
OE1 A:GLU219 2.3 43.1 1.0
O A:HOH2074 2.4 40.1 1.0
CD A:GLU271 3.1 38.1 1.0
CD A:GLU219 3.3 44.5 1.0
OE2 A:GLU271 3.3 38.2 1.0
CD A:GLU245 3.4 35.5 1.0
OE2 A:GLU219 3.5 36.3 1.0
NZ A:LYS170 3.7 26.6 1.0
O A:HOH2014 4.0 29.5 1.0
OE1 A:GLU246 4.1 37.6 1.0
NE2 A:GLN134 4.2 46.7 1.0
OE1 A:GLU245 4.2 40.7 1.0
CG A:GLU245 4.2 25.8 1.0
CD2 A:HIS321 4.3 28.9 1.0
O A:HOH2112 4.4 48.7 1.0
NE2 A:HIS321 4.5 29.0 1.0
CG A:GLU271 4.6 29.9 1.0
CE A:LYS170 4.6 26.4 1.0
O A:HOH2018 4.6 26.8 1.0
CD2 A:HIS221 4.7 35.6 1.0
CG A:GLU219 4.7 26.9 1.0
NE2 A:HIS221 4.9 34.2 1.0
OE2 A:GLU346 4.9 34.0 1.0
CD A:GLU246 5.0 40.8 1.0

Magnesium binding site 2 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 2 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:37.2
occ:1.00
OE2 B:GLU245 2.1 41.1 1.0
O B:HOH2237 2.3 41.4 1.0
OE1 B:GLU219 2.3 43.4 1.0
OE1 B:GLU271 2.4 36.7 1.0
O B:HOH2145 2.5 39.5 1.0
CD B:GLU271 3.2 37.7 1.0
CD B:GLU219 3.2 44.9 1.0
CD B:GLU245 3.3 35.2 1.0
OE2 B:GLU271 3.4 37.1 1.0
OE2 B:GLU219 3.4 33.7 1.0
NZ B:LYS170 3.8 24.6 1.0
CG B:GLU245 4.1 28.4 1.0
O B:HOH2047 4.1 29.9 1.0
OE1 B:GLU245 4.1 40.3 1.0
O B:HOH2058 4.2 43.1 1.0
OE1 B:GLU246 4.2 37.0 1.0
NE2 B:GLN134 4.3 23.0 0.5
CD2 B:HIS321 4.4 28.6 1.0
NE2 B:HIS321 4.5 28.1 1.0
O B:HOH2023 4.5 22.1 1.0
CE B:LYS170 4.6 26.1 1.0
CG B:GLU219 4.6 22.4 1.0
CG B:GLU271 4.6 30.3 1.0
CD2 B:HIS221 4.8 38.6 1.0
CG B:GLU246 4.8 26.9 1.0
CD B:GLU246 4.8 40.5 1.0

Magnesium binding site 3 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 3 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2003

b:34.2
occ:1.00
OE2 C:GLU245 2.1 40.4 1.0
OE1 C:GLU271 2.2 34.8 1.0
O C:HOH2073 2.3 42.2 1.0
OE1 C:GLU219 2.3 43.0 1.0
O C:HOH2192 2.4 47.9 1.0
CD C:GLU271 3.1 38.1 1.0
CD C:GLU219 3.2 45.2 1.0
OE2 C:GLU271 3.2 39.3 1.0
CD C:GLU245 3.3 35.0 1.0
OE2 C:GLU219 3.3 35.3 1.0
O C:HOH2193 3.8 56.8 1.0
NZ C:LYS170 3.9 25.8 1.0
O C:HOH2087 4.0 31.1 1.0
OE1 C:GLU246 4.0 38.0 1.0
OE1 C:GLU245 4.1 39.2 1.0
CG C:GLU245 4.2 25.6 1.0
NE2 C:GLN134 4.3 40.1 1.0
CD2 C:HIS321 4.3 30.0 1.0
O C:HOH2035 4.5 34.0 1.0
CG C:GLU271 4.5 30.3 1.0
NE2 C:HIS321 4.6 26.2 1.0
CG C:GLU219 4.6 23.8 1.0
CD2 C:HIS221 4.6 36.6 1.0
CE C:LYS170 4.7 26.4 1.0
CD C:GLU246 4.7 41.5 1.0
CG C:GLU246 4.9 30.1 1.0
NE2 C:HIS221 4.9 36.1 1.0

Magnesium binding site 4 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 4 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2004

b:36.6
occ:1.00
OE2 D:GLU245 2.2 39.8 1.0
OE1 D:GLU271 2.2 35.9 1.0
O D:HOH2205 2.3 51.2 1.0
O D:HOH2053 2.3 40.0 1.0
OE1 D:GLU219 2.3 43.8 1.0
CD D:GLU271 3.1 38.0 1.0
CD D:GLU219 3.3 45.2 1.0
CD D:GLU245 3.3 35.7 1.0
OE2 D:GLU271 3.4 38.1 1.0
OE2 D:GLU219 3.5 39.4 1.0
NZ D:LYS170 3.8 25.7 1.0
O D:HOH2029 3.9 31.1 1.0
OE1 D:GLU246 4.0 39.8 1.0
CG D:GLU245 4.1 28.2 1.0
OE1 D:GLU245 4.2 41.7 1.0
CD2 D:HIS321 4.3 31.5 1.0
NE2 D:GLN134 4.3 45.5 1.0
O D:HOH2201 4.4 50.9 1.0
O D:HOH2202 4.4 51.7 1.0
NE2 D:HIS321 4.5 30.0 1.0
CG D:GLU271 4.5 29.6 1.0
O D:HOH2023 4.6 29.1 1.0
CE D:LYS170 4.6 26.2 1.0
CG D:GLU219 4.7 26.6 1.0
CD2 D:HIS221 4.7 35.8 1.0
CD D:GLU246 4.8 42.0 1.0
CG D:GLU246 4.9 31.3 1.0
NE2 D:HIS221 4.9 34.9 1.0

Magnesium binding site 5 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 5 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg2005

b:37.3
occ:1.00
OE2 E:GLU245 2.2 41.8 1.0
O E:HOH2234 2.3 44.8 1.0
OE1 E:GLU219 2.3 42.1 1.0
OE1 E:GLU271 2.4 37.1 1.0
O E:HOH2175 2.5 41.6 1.0
O E:HOH2202 3.0 59.4 1.0
CD E:GLU219 3.2 44.5 1.0
CD E:GLU271 3.2 39.6 1.0
OE2 E:GLU271 3.3 39.1 1.0
OE2 E:GLU219 3.4 32.6 1.0
CD E:GLU245 3.4 35.3 1.0
NZ E:LYS170 3.9 23.7 1.0
OE1 E:GLU246 4.0 38.8 1.0
CG E:GLU245 4.2 28.4 1.0
OE1 E:GLU245 4.2 40.7 1.0
O E:HOH2094 4.3 29.6 1.0
NE2 E:GLN134 4.3 41.5 1.0
O E:HOH2055 4.3 52.0 1.0
CD2 E:HIS321 4.4 29.7 1.0
O E:HOH2014 4.5 25.2 1.0
NE2 E:HIS321 4.5 30.0 1.0
CD2 E:HIS221 4.6 37.1 1.0
CG E:GLU219 4.6 22.8 1.0
CG E:GLU271 4.6 30.0 1.0
CE E:LYS170 4.7 28.0 1.0
CD E:GLU246 4.7 41.0 1.0
CG E:GLU246 4.8 29.0 1.0
NE2 E:HIS221 4.9 33.6 1.0

Magnesium binding site 6 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 6 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg2006

b:37.1
occ:1.00
OE2 F:GLU245 2.2 39.1 1.0
OE1 F:GLU271 2.3 35.4 1.0
OE1 F:GLU219 2.3 43.0 1.0
O F:HOH2072 2.3 37.4 1.0
CD F:GLU271 3.1 37.6 1.0
CD F:GLU219 3.2 45.7 1.0
OE2 F:GLU271 3.3 36.5 1.0
CD F:GLU245 3.4 34.7 1.0
OE2 F:GLU219 3.4 35.5 1.0
NZ F:LYS170 3.8 24.2 1.0
O F:HOH2137 3.9 51.7 1.0
OE1 F:GLU246 4.0 39.4 1.0
O F:HOH2065 4.1 32.6 1.0
OE1 F:GLU245 4.2 40.9 1.0
NE2 F:GLN134 4.2 37.8 1.0
CG F:GLU245 4.3 27.0 1.0
CD2 F:HIS321 4.3 29.6 1.0
O F:HOH2038 4.5 27.7 1.0
NE2 F:HIS321 4.5 28.3 1.0
CG F:GLU271 4.5 31.0 1.0
CG F:GLU219 4.6 24.5 1.0
CD2 F:HIS221 4.6 37.4 1.0
CE F:LYS170 4.7 26.5 1.0
CD F:GLU246 4.8 41.4 1.0
CG F:GLU246 4.9 29.4 1.0
NE2 F:HIS221 4.9 35.1 1.0
OE2 F:GLU346 5.0 33.2 1.0

Magnesium binding site 7 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 7 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg2007

b:27.6
occ:1.00
OE2 G:GLU245 2.1 38.7 1.0
OE1 G:GLU219 2.3 40.5 1.0
O G:HOH2227 2.3 47.1 1.0
OE1 G:GLU271 2.3 36.3 1.0
O G:HOH2191 2.3 50.4 1.0
O G:HOH2107 2.4 33.3 1.0
CD G:GLU219 3.1 44.3 1.0
CD G:GLU245 3.2 33.7 1.0
CD G:GLU271 3.2 38.6 1.0
OE2 G:GLU219 3.2 34.2 1.0
OE2 G:GLU271 3.5 35.5 1.0
NZ G:LYS170 3.9 24.9 1.0
OE1 G:GLU246 4.0 38.1 1.0
O G:HOH2063 4.0 28.4 1.0
OE1 G:GLU245 4.0 39.8 1.0
CG G:GLU245 4.0 27.0 1.0
NE2 G:GLN134 4.3 35.2 1.0
CD2 G:HIS321 4.4 28.0 1.0
O G:HOH2144 4.4 49.0 1.0
NE2 G:HIS321 4.5 28.8 1.0
CG G:GLU219 4.5 25.6 1.0
CD2 G:HIS221 4.5 36.7 1.0
CG G:GLU271 4.6 27.9 1.0
CE G:LYS170 4.6 24.1 1.0
O G:HOH2036 4.7 24.6 1.0
CD G:GLU246 4.8 40.4 1.0
NE2 G:HIS221 4.8 34.9 1.0
CG G:GLU246 4.9 27.1 1.0

Magnesium binding site 8 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 8 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg2008

b:30.6
occ:1.00
OE2 H:GLU245 2.1 39.0 1.0
OE1 H:GLU271 2.3 37.4 1.0
O H:HOH2115 2.3 35.3 1.0
OE1 H:GLU219 2.3 41.4 1.0
O H:HOH2215 2.7 46.9 1.0
CD H:GLU219 3.2 43.6 1.0
CD H:GLU245 3.2 34.5 1.0
CD H:GLU271 3.2 38.4 1.0
OE2 H:GLU219 3.4 35.8 1.0
OE2 H:GLU271 3.5 34.8 1.0
NZ H:LYS170 3.8 22.1 1.0
OE1 H:GLU246 3.9 36.3 1.0
O H:HOH2098 4.0 31.5 1.0
OE1 H:GLU245 4.0 40.0 1.0
CG H:GLU245 4.1 25.6 1.0
CD2 H:HIS321 4.3 29.3 1.0
NE2 H:GLN134 4.3 29.4 1.0
NE2 H:HIS321 4.5 30.3 1.0
CG H:GLU219 4.6 26.6 1.0
CG H:GLU271 4.6 29.9 1.0
O H:HOH2216 4.6 45.4 1.0
CE H:LYS170 4.6 26.8 1.0
CD2 H:HIS221 4.7 37.6 1.0
CD H:GLU246 4.7 39.6 1.0
O H:HOH2035 4.7 25.2 1.0
CG H:GLU246 4.9 27.6 1.0
NE2 H:HIS221 5.0 33.6 1.0

Reference:

Y.Patskovsky, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo. Crystal Structure of Putative Enolase From Salmonella Typhimurium LT2 To Be Published.
Page generated: Sun Aug 10 12:23:33 2025

Last articles

Mg in 7BT7
Mg in 7BTD
Mg in 7BSV
Mg in 7BSJ
Mg in 7BSQ
Mg in 7BSU
Mg in 7BSS
Mg in 7BOH
Mg in 7BOI
Mg in 7BRS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy