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Magnesium in PDB 2oy9: Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223

Protein crystallography data

The structure of Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223, PDB code: 2oy9 was solved by R.Sugadev, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.78 / 1.60
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 91.568, 91.568, 47.241, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223 (pdb code 2oy9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223, PDB code: 2oy9:

Magnesium binding site 1 out of 1 in 2oy9

Go back to Magnesium Binding Sites List in 2oy9
Magnesium binding site 1 out of 1 in the Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Unknown Conserved Protein- Pfam: UPF0223 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg400

b:23.2
occ:1.00
O B:HOH428 1.9 32.4 1.0
O B:HOH455 2.0 28.6 1.0
O B:HOH433 2.0 21.2 1.0
O B:HOH460 2.0 23.6 1.0
O B:HOH461 2.0 27.3 1.0
O B:HOH459 2.2 32.1 1.0
OD2 B:ASP12 3.8 14.3 1.0
OD1 B:ASP12 4.1 17.2 1.0
CG B:ASP12 4.3 15.1 1.0
O B:HOH417 4.4 13.4 1.0
O B:SER10 5.0 27.7 1.0

Reference:

R.Sugadev, S.K.Burley, S.Swaminathan. Crystal Structure of An Unknown Conserved Protein - Pfam: UPF0223 To Be Published.
Page generated: Sun Aug 10 12:49:57 2025

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