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Magnesium in PDB 2ozm: Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog

Enzymatic activity of Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog

All present enzymatic activity of Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog, PDB code: 2ozm was solved by K.E.Zahn, H.Belrhali, S.S.Wallace, S.Doublie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.86
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.232, 117.492, 126.142, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 26.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog (pdb code 2ozm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog, PDB code: 2ozm:

Magnesium binding site 1 out of 1 in 2ozm

Go back to Magnesium Binding Sites List in 2ozm
Magnesium binding site 1 out of 1 in the Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RB69 GP43 in Complex with Dna with 5-Nitp Opposite An Abasic Site Analog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:42.7
occ:1.00
 O2G A:N5P905 1.8 36.5 1.0
O2B A:N5P905 2.0 37.6 1.0
O A:LEU412 2.1 52.5 1.0
OD1 A:ASP411 2.1 54.2 1.0
OD2 A:ASP623 2.4 59.2 1.0
O2A A:N5P905 2.4 38.6 1.0
PB A:N5P905 2.8 37.8 1.0
PG A:N5P905 3.0 37.3 1.0
O3A A:N5P905 3.0 38.5 1.0
O3B A:N5P905 3.2 38.0 1.0
C A:LEU412 3.3 52.6 1.0
PA A:N5P905 3.3 38.7 1.0
CG A:ASP411 3.3 54.8 1.0
CG A:ASP623 3.5 58.6 1.0
O3G A:N5P905 4.0 38.6 1.0
OD2 A:ASP411 4.0 54.6 1.0
N A:SER414 4.0 50.4 1.0
O1G A:N5P905 4.0 38.6 1.0
N A:LEU412 4.0 53.5 1.0
O A:HOH1206 4.1 63.2 1.0
OD1 A:ASP623 4.1 58.8 1.0
O5' A:N5P905 4.2 38.9 1.0
CA A:LEU412 4.2 52.8 1.0
C5' A:N5P905 4.2 38.4 1.0
N A:THR413 4.3 52.1 1.0
O1B A:N5P905 4.3 38.4 1.0
CA A:THR413 4.4 51.8 1.0
C A:ASP411 4.4 54.2 1.0
CB A:ASP411 4.4 54.8 1.0
N A:LEU415 4.4 48.4 1.0
C A:THR413 4.5 51.2 1.0
O1A A:N5P905 4.6 38.5 1.0
CB A:ASP623 4.7 58.8 1.0
CA A:SER414 4.7 50.0 1.0
CB A:LEU412 4.8 52.7 1.0
O A:ASP411 4.8 54.1 1.0
CA A:ASP411 5.0 54.7 1.0

Reference:

K.E.Zahn, H.Belrhail, S.S.Wallace, S.Doublie. Caught Bending the A-Rule: Crystal Structures of Translesion Dna Synthesis with A Non-Natural Nucleotide Biochemistry V. 46 10551 2007.
ISSN: ISSN 0006-2960
PubMed: 17718515
DOI: 10.1021/BI7008807
Page generated: Wed Aug 14 02:01:24 2024

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