Atomistry » Magnesium » PDB 2qrn-2r1y » 2qt0
Atomistry »
  Magnesium »
    PDB 2qrn-2r1y »
      2qt0 »

Magnesium in PDB 2qt0: Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue

Protein crystallography data

The structure of Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue, PDB code: 2qt0 was solved by W.M.Rabeh, W.Tempel, L.Nedyalkova, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, C.Brenner, H.Park, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.92
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 97.025, 97.025, 44.801, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue (pdb code 2qt0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue, PDB code: 2qt0:

Magnesium binding site 1 out of 1 in 2qt0

Go back to Magnesium Binding Sites List in 2qt0
Magnesium binding site 1 out of 1 in the Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Nicotinamide Riboside Kinase 1 in Complex with Nicotinamide Riboside and An Atp Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:26.3
occ:1.00
O2B A:ANP1102 2.0 22.0 1.0
O1G A:ANP1102 2.1 22.1 1.0
OD2 A:ASP36 2.1 28.8 1.0
O A:HOH232 2.1 21.4 1.0
OG1 A:THR17 2.1 23.5 1.0
O A:HOH231 2.2 23.4 1.0
CG A:ASP36 3.1 31.3 1.0
PB A:ANP1102 3.2 26.9 1.0
CB A:THR17 3.2 23.8 1.0
PG A:ANP1102 3.3 28.2 1.0
OD1 A:ASP36 3.3 30.9 1.0
N3B A:ANP1102 3.4 25.8 1.0
NZ A:LYS16 3.9 30.3 1.0
OE1 A:GLU98 4.1 21.3 1.0
O A:HOH215 4.1 34.6 1.0
N A:THR17 4.1 24.4 1.0
O1A A:ANP1102 4.1 26.9 1.0
O1B A:ANP1102 4.1 25.5 1.0
OE2 A:GLU98 4.1 25.4 1.0
O2G A:ANP1102 4.2 27.2 1.0
CA A:THR17 4.2 22.1 1.0
CG2 A:THR17 4.3 23.4 1.0
O3G A:ANP1102 4.3 27.5 1.0
O3A A:ANP1102 4.4 26.4 1.0
CB A:ASP36 4.5 27.7 1.0
CD A:GLU98 4.5 25.6 1.0
PA A:ANP1102 4.7 28.8 1.0
O A:HOH208 4.8 29.5 1.0
O5R A:NNR1103 4.9 35.4 1.0
OG A:SER34 4.9 15.3 0.5
CB A:LYS16 5.0 26.6 1.0

Reference:

W.Tempel, W.M.Rabeh, K.L.Bogan, P.Belenky, M.Wojcik, H.F.Seidle, L.Nedyalkova, T.Yang, A.A.Sauve, H.W.Park, C.Brenner. Nicotinamide Riboside Kinase Structures Reveal New Pathways to Nad(+). Plos Biol. V. 5 E263 2007.
ISSN: ISSN 1544-9173
PubMed: 17914902
DOI: 10.1371/JOURNAL.PBIO.0050263
Page generated: Wed Aug 14 03:08:17 2024

Last articles

Fe in 4RM4
Fe in 4RLR
Fe in 4RAS
Fe in 4REU
Fe in 4RH1
Fe in 4RH0
Fe in 4RC7
Fe in 4RCR
Fe in 4RC8
Fe in 4RB4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy