Magnesium in PDB 2r42: The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism

Enzymatic activity of The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism

All present enzymatic activity of The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism:
2.7.1.36;

Protein crystallography data

The structure of The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism, PDB code: 2r42 was solved by Z.Fu, N.E.Voynova, H.M.Miziorko, J.P.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	28.03 / 2.40
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	77.990, 118.430, 42.860, 90.00, 90.00, 90.00
*R / R_free (%)*	23.5 / 27.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism (pdb code 2r42). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism, PDB code: 2r42:

Magnesium binding site 1 out of 1 in 2r42

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Magnesium Binding Sites List in 2r42

Magnesium binding site 1 out of 1 in the The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg500 b:89.1 occ:1.00	OD1	A:ASP204	2.9	37.3	1.0
	O2A	A:FPS400	3.1	99.5	1.0
	OG	A:SER146	3.2	38.6	1.0
	OE2	A:GLU193	3.4	44.0	1.0
	CA	A:GLY144	3.5	31.7	1.0
	N	A:ALA147	3.5	38.5	1.0
	C	A:GLY144	3.6	32.4	1.0
	O	A:GLY144	3.7	32.1	1.0
	CG	A:ASP204	3.8	37.5	1.0
	N	A:SER146	3.9	35.9	1.0
	CB	A:ALA147	3.9	38.0	1.0
	CB	A:ASP204	4.0	35.0	1.0
	CB	A:SER146	4.0	35.9	1.0
	CE1	A:HIS197	4.1	65.9	1.0
	NE2	A:HIS197	4.2	65.4	1.0
	C	A:SER146	4.2	37.9	1.0
	CA	A:SER146	4.2	36.7	1.0
	CA	A:ALA147	4.3	37.6	1.0
	N	A:SER145	4.3	33.0	1.0
	CD	A:GLU193	4.4	44.5	1.0
	PA	A:FPS400	4.4	0.5	1.0
	O3A	A:FPS400	4.5	0.3	1.0
	OE1	A:GLU193	4.6	43.5	1.0
	N	A:GLY144	4.6	33.4	1.0
	O1A	A:FPS400	4.8	98.6	1.0
	C	A:SER145	4.8	35.4	1.0
	ND1	A:HIS197	4.9	65.7	1.0
	CD2	A:HIS197	5.0	66.2	1.0
	OD2	A:ASP204	5.0	37.2	1.0

Reference:

Z.Fu, N.E.Voynova, T.J.Herdendorf, H.M.Miziorko, J.J.Kim. Biochemical and Structural Basis For Feedback Inhibition of Mevalonate Kinase and Isoprenoid Metabolism. Biochemistry V. 47 3715 2008.
ISSN: ISSN 0006-2960
PubMed: 18302342
DOI: 10.1021/BI7024386

Page generated: Sun Aug 10 13:41:29 2025

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