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Magnesium in PDB 2r5t: Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp

Enzymatic activity of Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp

All present enzymatic activity of Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp, PDB code: 2r5t was solved by B.Zhao, R.Lehr, A.M.Smallwood, T.F.Ho, K.Maley, T.Randall, M.S.Head, K.K.Koretke, C.G.Schnackenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.90
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 97.873, 97.873, 147.848, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 21.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp (pdb code 2r5t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp, PDB code: 2r5t:

Magnesium binding site 1 out of 1 in 2r5t

Go back to Magnesium Binding Sites List in 2r5t
Magnesium binding site 1 out of 1 in the Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Inactive Serum and Glucocorticoid- Regulated Kinase 1 in Complex with Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg600

b:46.9
occ:1.00
 OE1 A:GLU226 2.0 47.0 1.0
O1B A:ANP500 2.2 68.8 1.0
O2A A:ANP500 2.2 58.8 1.0
O2G A:ANP500 2.3 61.4 1.0
CD A:GLU226 2.9 45.8 1.0
PB A:ANP500 3.1 62.9 1.0
PA A:ANP500 3.2 58.0 1.0
O3A A:ANP500 3.2 60.3 1.0
OE2 A:GLU226 3.3 47.9 1.0
PG A:ANP500 3.5 60.9 1.0
N3B A:ANP500 3.8 60.2 1.0
CA A:GLY107 4.1 70.2 1.0
O1G A:ANP500 4.2 64.1 1.0
CG A:GLU226 4.2 38.4 1.0
ND2 A:ASN227 4.2 37.6 1.0
C5' A:ANP500 4.3 60.5 1.0
N A:SER108 4.3 75.8 1.0
O5' A:ANP500 4.3 57.5 1.0
O1A A:ANP500 4.3 55.6 1.0
O A:HOH907 4.4 51.9 1.0
NZ A:LYS224 4.4 45.5 1.0
O2B A:ANP500 4.5 64.2 1.0
OG A:SER108 4.6 82.8 1.0
O A:LYS106 4.7 73.5 1.0
CE A:LYS224 4.7 46.0 1.0
O3G A:ANP500 4.7 59.4 1.0
C A:GLY107 4.8 74.5 1.0

Reference:

B.Zhao, R.Lehr, A.M.Smallwood, T.F.Ho, K.Maley, T.Randall, M.S.Head, K.K.Koretke, C.G.Schnackenberg. Crystal Structure of the Kinase Domain of Serum and Glucocorticoid-Regulated Kinase 1 in Complex with Amp Pnp. Protein Sci. V. 16 2761 2007.
ISSN: ISSN 0961-8368
PubMed: 17965184
DOI: 10.1110/PS.073161707
Page generated: Sun Aug 10 13:41:30 2025

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