Atomistry » Magnesium » PDB 2uxj-2v7y » 2uza
Atomistry »
  Magnesium »
    PDB 2uxj-2v7y »
      2uza »

Magnesium in PDB 2uza: Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus

Enzymatic activity of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus

All present enzymatic activity of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus:
1.2.7.1;

Protein crystallography data

The structure of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus, PDB code: 2uza was solved by E.Chabriere, C.Cavazza, C.Contreras-Martel, J.C.Fontecilla-Camps, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.47 / 2.42
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.948, 146.155, 211.327, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.6

Other elements in 2uza:

The structure of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus also contains other interesting chemical elements:

Iron (Fe) 24 atoms
Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus (pdb code 2uza). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus, PDB code: 2uza:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2uza

Go back to Magnesium Binding Sites List in 2uza
Magnesium binding site 1 out of 2 in the Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1238

b:9.2
occ:1.00
O21 A:HTL1236 2.0 14.8 1.0
OD1 A:ASP963 2.1 17.7 1.0
O A:VAL993 2.1 18.3 1.0
O A:HOH2324 2.1 15.4 1.0
O12 A:HTL1236 2.2 14.6 1.0
OG1 A:THR991 2.3 15.9 1.0
CG A:ASP963 3.2 17.0 1.0
P2 A:HTL1236 3.2 22.8 1.0
C A:VAL993 3.3 20.6 1.0
O11 A:HTL1236 3.3 18.6 1.0
P1 A:HTL1236 3.4 21.7 1.0
CB A:THR991 3.6 16.5 1.0
O22 A:HTL1236 3.7 17.9 1.0
OD2 A:ASP963 3.8 20.6 1.0
N A:ASP963 3.8 10.8 1.0
N A:SER995 3.9 11.4 1.0
OG A:SER995 3.9 16.3 1.0
CG2 A:THR991 4.0 20.4 1.0
N A:THR991 4.0 15.8 1.0
N A:VAL993 4.1 15.2 1.0
O5G A:HTL1236 4.1 20.8 1.0
N A:TYR994 4.2 20.7 1.0
CA A:TYR994 4.2 18.8 1.0
CA A:THR991 4.3 14.1 1.0
N A:GLY964 4.3 7.4 1.0
CA A:VAL993 4.3 19.0 1.0
CB A:ASP963 4.4 14.2 1.0
O23 A:HTL1236 4.4 21.9 1.0
CA A:GLY962 4.5 10.2 1.0
CB A:SER995 4.5 13.2 1.0
O13 A:HTL1236 4.5 23.0 1.0
C A:THR991 4.5 13.6 1.0
CA A:ASP963 4.5 13.3 1.0
C A:GLY962 4.6 11.7 1.0
O A:MET989 4.6 19.1 1.0
C A:TYR994 4.6 15.1 1.0
N A:GLU992 4.6 15.4 1.0
CA A:SER995 4.8 14.3 1.0
C A:ASP963 5.0 12.5 1.0
CG2 A:VAL993 5.0 15.3 1.0

Magnesium binding site 2 out of 2 in 2uza

Go back to Magnesium Binding Sites List in 2uza
Magnesium binding site 2 out of 2 in the Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Free Radical Intermediate of Pyruvate:Ferredoxin Oxidoreductase From Desulfovibrio Africanus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1238

b:3.2
occ:1.00
O B:HOH2450 2.0 14.5 1.0
O21 B:HTL1236 2.1 9.0 1.0
OD1 B:ASP963 2.1 14.3 1.0
OG1 B:THR991 2.2 9.6 1.0
O13 B:HTL1236 2.2 18.4 1.0
O B:VAL993 2.2 19.6 1.0
CG B:ASP963 3.2 9.2 1.0
P2 B:HTL1236 3.2 13.0 1.0
P1 B:HTL1236 3.3 14.0 1.0
O11 B:HTL1236 3.3 11.2 1.0
C B:VAL993 3.4 14.4 1.0
CB B:THR991 3.5 11.1 1.0
OD2 B:ASP963 3.7 7.2 1.0
N B:THR991 3.8 8.7 1.0
N B:ASP963 3.8 4.8 1.0
O22 B:HTL1236 3.9 14.5 1.0
CG2 B:THR991 3.9 5.1 1.0
OG B:SER995 3.9 11.8 1.0
N B:SER995 4.0 10.2 1.0
CA B:THR991 4.1 10.7 1.0
N B:VAL993 4.1 13.3 1.0
O5G B:HTL1236 4.2 11.9 1.0
N B:TYR994 4.3 16.7 1.0
CA B:TYR994 4.3 15.1 1.0
O23 B:HTL1236 4.3 12.3 1.0
N B:GLY964 4.4 3.7 1.0
CB B:ASP963 4.4 4.6 1.0
CA B:VAL993 4.4 12.4 1.0
O12 B:HTL1236 4.4 15.5 1.0
O B:MET989 4.4 11.3 1.0
CA B:GLY962 4.4 8.9 1.0
C B:THR991 4.5 11.3 1.0
CB B:SER995 4.5 11.1 1.0
N B:GLU992 4.6 9.3 1.0
C B:GLY962 4.6 6.7 1.0
CA B:ASP963 4.6 5.7 1.0
C B:TYR994 4.7 12.4 1.0
CA B:SER995 4.9 10.3 1.0
CG2 B:VAL993 4.9 13.2 1.0
OE2 B:GLU817 5.0 11.5 1.0
C B:ASP990 5.0 10.1 1.0

Reference:

C.Cavazza, C.Contreras-Martel, L.Pieulle, E.Chabriere, E.C.Hatchikian, J.C.Fontecilla-Camps. Flexibility of Thiamine Diphosphate Revealed By Kinetic Crystallographic Studies of the Reaction of Pyruvate-Ferredoxin Oxidoreductase with Pyruvate. Structure V. 14 217 2006.
ISSN: ISSN 0969-2126
PubMed: 16472741
DOI: 10.1016/J.STR.2005.10.013
Page generated: Wed Aug 14 04:56:26 2024

Last articles

K in 5FK6
K in 5FKE
K in 5FKD
K in 5FK5
K in 5FJC
K in 5FK3
K in 5FHW
K in 5FCW
K in 5FG0
K in 5FHT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy