Magnesium in PDB 2w4k: X-Ray Structure of A Dap-Kinase 2-302

All present enzymatic activity of X-Ray Structure of A Dap-Kinase 2-302:
2.7.11.1;

The structure of X-Ray Structure of A Dap-Kinase 2-302, PDB code: 2w4k was solved by I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.87 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.310, 76.970, 108.936, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 22.8

The binding sites of Magnesium atom in the X-Ray Structure of A Dap-Kinase 2-302 (pdb code 2w4k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of A Dap-Kinase 2-302, PDB code: 2w4k:

Magnesium binding site 1 out of 1 in the X-Ray Structure of A Dap-Kinase 2-302


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of A Dap-Kinase 2-302 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1304 b:23.6 occ:1.00 O A:HOH2270 1.9 14.2 1.0 O A:HOH2271 1.9 44.9 1.0 O3B A:ADP1303 2.0 36.7 1.0 OD2 A:ASP161 2.2 18.5 1.0 O1A A:ADP1303 2.3 26.8 1.0 O A:HOH2157 2.4 29.4 1.0 CG A:ASP161 3.1 17.6 1.0 PB A:ADP1303 3.3 37.2 1.0 PA A:ADP1303 3.5 26.2 1.0 O3A A:ADP1303 3.6 31.8 1.0 OD1 A:ASP161 3.8 17.7 1.0 O2B A:ADP1303 3.9 37.2 1.0 OD1 A:ASN144 4.0 16.9 1.0 OE2 A:GLU143 4.1 34.2 1.0 CB A:ASP161 4.1 16.0 1.0 O A:HOH2267 4.4 44.3 1.0 O3' A:ADP1303 4.4 29.9 1.0 C5' A:ADP1303 4.4 25.5 1.0 O5' A:ADP1303 4.5 24.5 1.0 OD2 A:ASP139 4.5 19.0 1.0 O1B A:ADP1303 4.6 36.6 1.0 O2A A:ADP1303 4.6 25.1 1.0 O A:HOH2143 4.6 26.6 1.0 ND2 A:ASN144 4.8 13.1 1.0 CG A:ASN144 4.8 16.9 1.0 C3' A:ADP1303 4.9 28.2 1.0

K.Temmerman, I.De Diego, V.Pogenberg, B.Simon, W.Jonko, X.Li, M.Wilmanns. A Pef/Y Substrate Recognition and Signature Motif Plays A Critical Role in Dapk-Related Kinase Activity. Chem.Biol. V. 21 264 2014.
ISSN: ISSN 1074-5521
PubMed: 24440081
DOI: 10.1016/J.CHEMBIOL.2013.12.008