Magnesium in PDB 2wji: Structure and Function of the Feob G-Domain From Methanococcus Jannaschii

The structure of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wji was solved by S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.184 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.550, 68.450, 52.990, 90.00, 96.97, 90.00
R / Rfree (%)	21.85 / 26.86

The binding sites of Magnesium atom in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii (pdb code 2wji). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii, PDB code: 2wji:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1167 b:35.3 occ:1.00 O2B A:GNP1166 2.2 26.0 1.0 O1G A:GNP1166 2.2 29.7 1.0 O A:HOH2031 2.2 31.9 1.0 O A:HOH2046 2.3 32.0 1.0 OG A:SER17 2.4 35.6 1.0 O A:HOH2093 2.5 37.9 1.0 CB A:SER17 3.3 35.3 1.0 PB A:GNP1166 3.3 31.6 1.0 PG A:GNP1166 3.3 32.6 1.0 N3B A:GNP1166 3.5 31.6 1.0 N A:SER17 3.8 28.6 1.0 O3G A:GNP1166 4.0 37.9 1.0 O A:HOH2092 4.0 31.4 1.0 O2A A:GNP1166 4.0 26.6 1.0 OE2 A:GLU39 4.1 55.1 1.0 CA A:SER17 4.1 30.3 1.0 OE1 A:GLU39 4.2 56.7 1.0 O A:HOH2033 4.2 33.6 1.0 O1B A:GNP1166 4.3 27.9 1.0 O3A A:GNP1166 4.4 31.0 1.0 OD2 A:ASP56 4.5 33.6 1.0 O2G A:GNP1166 4.5 30.0 1.0 CD A:GLU39 4.6 54.3 1.0 PA A:GNP1166 4.6 32.4 1.0 CB A:LYS16 4.7 22.5 1.0 C A:LYS16 4.9 26.0 1.0 CE A:LYS16 4.9 25.4 1.0 O1A A:GNP1166 5.0 36.7 1.0

Magnesium binding site 2 out of 2 in the Structure and Function of the Feob G-Domain From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure and Function of the Feob G-Domain From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1167 b:45.0 occ:1.00 O1G B:GNP1166 2.3 33.3 1.0 OG B:SER17 2.5 34.2 1.0 O B:HOH2022 2.5 66.1 1.0 O B:HOH2032 2.5 33.8 1.0 O B:HOH2077 2.6 39.5 1.0 O2B B:GNP1166 2.7 30.9 1.0 PG B:GNP1166 3.5 34.9 1.0 CB B:SER17 3.7 32.3 1.0 N3B B:GNP1166 3.8 28.4 1.0 O B:HOH2025 3.9 76.5 1.0 PB B:GNP1166 3.9 29.9 1.0 O3G B:GNP1166 3.9 40.4 1.0 OE1 B:GLU39 3.9 71.0 1.0 O B:HOH2079 4.0 37.1 1.0 O B:HOH2033 4.1 38.2 1.0 OE2 B:GLU39 4.1 74.8 1.0 O B:HOH2078 4.2 57.6 1.0 N B:SER17 4.4 28.0 1.0 CD B:GLU39 4.4 73.7 1.0 O2A B:GNP1166 4.6 31.7 1.0 CA B:SER17 4.6 30.5 1.0 OD2 B:ASP56 4.6 37.9 1.0 O2G B:GNP1166 4.8 38.3 1.0 O1B B:GNP1166 4.8 26.8 1.0 NZ B:LYS41 5.0 63.1 1.0 O3A B:GNP1166 5.0 33.2 1.0

S.Koester, M.Wehner, C.Herrmann, W.Kuehlbrandt, O.Yildiz. Structure and Function of the Feob G-Domain From Methanococcus Jannaschii J.Mol.Biol. V. 392 405 2009.
ISSN: ISSN 0022-2836
PubMed: 19615379
DOI: 10.1016/J.JMB.2009.07.020