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Magnesium in PDB 2yqc: Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form

Enzymatic activity of Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form

All present enzymatic activity of Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form:
2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form, PDB code: 2yqc was solved by K.Miki, D.Maruyama, Y.Nishitani, T.Nonaka, A.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.70 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.774, 62.891, 90.602, 90.00, 97.82, 90.00
R / Rfree (%) 17.4 / 20.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form (pdb code 2yqc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form, PDB code: 2yqc:

Magnesium binding site 1 out of 1 in 2yqc

Go back to Magnesium Binding Sites List in 2yqc
Magnesium binding site 1 out of 1 in the Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans, in the Apo-Like Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1201

b:36.2
occ:1.00
 O A:HOH1736 2.2 35.6 1.0
O A:HOH1737 2.2 38.0 1.0
O A:ASN74 2.4 25.7 1.0
OG1 A:THR77 2.5 22.9 1.0
O A:THR77 2.5 18.5 1.0
OD1 A:ASN74 2.5 35.2 1.0
CG A:ASN74 3.2 33.2 1.0
C A:THR77 3.2 21.4 1.0
C A:ASN74 3.4 25.1 1.0
CB A:THR77 3.6 23.9 1.0
CA A:ASN74 3.7 28.0 1.0
ND2 A:ASN74 3.7 37.3 1.0
CA A:THR77 3.8 21.0 1.0
N A:THR77 3.9 23.4 1.0
CB A:ASN74 4.0 30.0 1.0
N A:ALA78 4.1 18.0 1.0
O A:HOH1547 4.3 28.9 1.0
O A:HOH1659 4.3 38.0 1.0
CA A:ALA78 4.4 16.5 1.0
O A:HOH1696 4.5 31.6 1.0
N A:GLU75 4.6 25.1 1.0
CG2 A:THR77 4.8 23.4 1.0

Reference:

D.Maruyama, Y.Nishitani, T.Nonaka, A.Kita, T.A.Fukami, T.Mio, H.Yamada-Okabe, T.Yamada-Okabe, K.Miki. Crystal Structure of Uridine-Diphospho-N-Acetylglucosamine Pyrophosphorylase From Candida Albicans and Catalytic Reaction Mechanism J.Biol.Chem. V. 282 17221 2007.
ISSN: ISSN 0021-9258
PubMed: 17392279
DOI: 10.1074/JBC.M611873200
Page generated: Sun Aug 10 16:47:34 2025

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