Magnesium in PDB 2ywh: Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus

The structure of Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus, PDB code: 2ywh was solved by M.Kawazoe, C.Takemoto, T.Kaminishi, A.Nishino, R.Nakayama-Ushikoshi, K.Hanawa-Suetsugu, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.18 / 2.24
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.676, 116.118, 122.721, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 26.2

The binding sites of Magnesium atom in the Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus (pdb code 2ywh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus, PDB code: 2ywh:

Magnesium binding site 1 out of 1 in the Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gdp-Bound Lepa From Aquifex Aeolicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:79.4 occ:1.00 O3B A:GDP801 2.1 66.4 1.0 OG A:SER20 2.1 61.8 1.0 O A:HOH910 2.3 53.4 1.0 O A:HOH883 2.7 58.8 1.0 O A:HOH899 3.0 66.0 1.0 PB A:GDP801 3.2 65.6 1.0 CB A:SER20 3.3 61.6 1.0 O1B A:GDP801 3.7 64.5 1.0 O2A A:GDP801 3.7 67.9 1.0 N A:SER20 3.9 60.2 1.0 CA A:SER20 4.1 60.4 1.0 O2B A:GDP801 4.3 65.0 1.0 O3A A:GDP801 4.3 68.4 1.0 PA A:GDP801 4.5 68.4 1.0 O1A A:GDP801 4.6 68.5 1.0 CB A:LYS19 4.7 59.9 1.0 C A:LYS19 4.9 59.5 1.0

M.Kawazoe, C.Takemoto, T.Kaminishi, A.Nishino, R.Nakayama-Ushikoshi, K.Hanawa-Suetsugu, T.Terada, M.Shirouzu, S.Yokoyama. Crystal Structures of Gtp-Binding Protein Lepa From Aquifex Aeolicus. To Be Published.