Magnesium in PDB 335d: The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets

The structure of The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets, PDB code: 335d was solved by C.M.Nunn, S.Neidle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.40
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	27.920, 39.210, 54.040, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / n/a

The binding sites of Magnesium atom in the The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets (pdb code 335d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets, PDB code: 335d:

Magnesium binding site 1 out of 1 in the The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major and Minor Groove Binding G.(G.C) Triplets within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg11 b:2.0 occ:0.50 O A:HOH15 2.1 25.6 0.5 N7 A:DG10 2.5 26.0 1.0 C8 A:DG10 3.4 26.6 1.0 C5 A:DG10 3.6 22.9 1.0 O6 A:DG10 3.8 25.4 1.0 OP2 A:DG10 4.0 27.8 1.0 C6 A:DG10 4.1 21.1 1.0 O A:HOH53 4.4 56.9 1.0 N9 A:DG10 4.7 26.0 1.0 C4 A:DG10 4.8 24.8 1.0

C.M.Nunn, S.Neidle. Structure of the Dna Decamer D(Ggcaattgcg) Contains Both Major- and Minor-Groove Binding G.(G.C) Base Triplets. Acta Crystallogr.,Sect.D V. 54 577 1998.
ISSN: ISSN 0907-4449
PubMed: 9761852
DOI: 10.1107/S090744499701559X