Magnesium in PDB 383d: Hydration and Recognition of Methylated Cpg Steps in Dna

The structure of Hydration and Recognition of Methylated Cpg Steps in Dna, PDB code: 383d was solved by C.Mayer-Jung, D.Moras, Y.Timsit, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	7.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	23.900, 45.300, 46.900, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / n/a

The binding sites of Magnesium atom in the Hydration and Recognition of Methylated Cpg Steps in Dna (pdb code 383d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Hydration and Recognition of Methylated Cpg Steps in Dna, PDB code: 383d:

Magnesium binding site 1 out of 1 in the Hydration and Recognition of Methylated Cpg Steps in Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hydration and Recognition of Methylated Cpg Steps in Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg21 b:33.5 occ:1.00 O B:HOH104 1.9 36.9 1.0 O B:HOH103 2.0 38.7 1.0 O B:HOH105 2.2 21.8 1.0 O B:HOH106 2.3 35.0 1.0 O B:HOH108 2.4 33.7 1.0 O B:HOH107 2.5 27.6 1.0 O B:HOH83 4.1 32.9 1.0 N7 B:DG19 4.1 11.9 1.0 N7 B:DG20 4.1 12.0 1.0 O B:HOH82 4.2 39.9 1.0 O6 B:DG19 4.3 11.0 1.0 O B:HOH86 4.4 31.9 1.0 O6 B:DG20 4.4 13.0 1.0 C5 B:DG19 4.7 12.1 1.0 C6 B:DG19 4.7 11.8 1.0 C8 B:DG19 5.0 11.2 1.0

C.Mayer-Jung, D.Moras, Y.Timsit. Hydration and Recognition of Methylated Cpg Steps in Dna Embo J. V. 17 2709 1998.
ISSN: ISSN 0261-4189
PubMed: 9564052
DOI: 10.1093/EMBOJ/17.9.2709