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Magnesium in PDB 3a13: Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Enzymatic activity of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
All present enzymatic activity of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca:
4.1.1.39;
4.1.1.39;
Protein crystallography data
The structure of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca, PDB code: 3a13
was solved by
Y.Nishitani,
M.Fujihashi,
T.Doi,
S.Yoshida,
H.Atomi,
T.Imanaka,
K.Miki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 42.22 / 2.34 |
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 173.678, 247.090, 144.940, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.5 / 25 |
Other elements in 3a13:
The structure of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca also contains other interesting chemical elements:
| Calcium | (Ca) | 2 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
(pdb code 3a13). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca, PDB code: 3a13:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca, PDB code: 3a13:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 1 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 2 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 3 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 4 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 5 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 6 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 7 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 3a13
Go back to
Magnesium Binding Sites List in 3a13
Magnesium binding site 8 out
of 8 in the Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Type III Rubisco SP4 Mutant Complexed with 2-Cabp and Activated with Ca within 5.0Å range:
|
Reference:
Y.Nishitani,
M.Fujihashi,
T.Doi,
S.Yoshida,
H.Atomi,
T.Imanaka,
K.Miki.
Sturcture-Based Optimization of A Type III Rubisco From A Hyperthermophile To Be Published.
Page generated: Wed Aug 14 08:25:15 2024
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