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Magnesium in PDB 3b4u: Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58

Protein crystallography data

The structure of Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58, PDB code: 3b4u was solved by R.Zhang, L.Xu, J.Gu, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.88 / 1.20
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.116, 49.442, 69.084, 79.35, 89.06, 83.94
R / Rfree (%) 12.7 / 15.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58 (pdb code 3b4u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58, PDB code: 3b4u:

Magnesium binding site 1 out of 1 in 3b4u

Go back to Magnesium Binding Sites List in 3b4u
Magnesium binding site 1 out of 1 in the Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens Str. C58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg295

b:6.5
occ:1.00
O B:HOH316 2.0 8.2 1.0
O A:HOH934 2.1 9.9 1.0
O A:HOH308 2.1 8.9 1.0
OD2 B:ASP82 2.1 6.6 1.0
OD2 A:ASP82 2.1 6.7 1.0
CG B:ASP82 3.1 6.4 1.0
CG A:ASP82 3.1 6.5 1.0
OD1 B:ASP82 3.4 6.8 1.0
OD1 A:ASP82 3.4 6.9 1.0
O B:HOH328 4.1 8.9 1.0
O B:HOH323 4.1 9.2 1.0
OG A:SER108 4.1 10.1 1.0
OG B:SER108 4.2 10.1 1.0
O B:HOH303 4.4 8.0 1.0
O A:HOH298 4.4 7.8 1.0
CB B:ASP82 4.4 6.3 1.0
CB A:ASP82 4.4 6.6 1.0
O A:LEU80 4.4 10.3 1.0
O B:LEU80 4.5 8.9 1.0
N B:ASP82 4.8 6.4 1.0
N A:ASP82 4.9 6.5 1.0

Reference:

R.Zhang, L.Xu, J.Gu, A.Savchenko, A.M.Edwards, A.Joachimiak. The Crystal Structure of the Dihydrodipicolinate Synthase From Agrobacterium Tumefaciens. To Be Published.
Page generated: Sun Aug 10 17:38:33 2025

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