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Magnesium in PDB 3b7w: Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation

Enzymatic activity of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation

All present enzymatic activity of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation:
6.2.1.2;

Protein crystallography data

The structure of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation, PDB code: 3b7w was solved by E.S.Pilka, G.T.Kochan, A.C.W.Pike, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, U.Oppermann, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 98.426, 109.173, 176.926, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 21.4

Other elements in 3b7w:

The structure of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation (pdb code 3b7w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation, PDB code: 3b7w:

Magnesium binding site 1 out of 1 in 3b7w

Go back to Magnesium Binding Sites List in 3b7w
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A, with L64P Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:37.8
occ:1.00
 O A:HIS485 2.3 38.3 1.0
O A:VAL488 2.3 39.7 1.0
O A:MET483 2.3 42.2 1.0
O A:HOH1087 2.4 43.6 1.0
O A:HOH1094 2.5 38.5 1.0
O A:HOH1093 2.5 48.0 1.0
C A:MET483 3.4 43.0 1.0
C A:HIS485 3.4 39.6 1.0
C A:VAL488 3.4 42.6 1.0
O A:HOH1126 3.9 45.9 1.0
CA A:PRO486 3.9 46.5 1.0
N A:VAL488 4.0 45.5 1.0
CA A:MET483 4.0 41.2 1.0
CA A:VAL488 4.1 41.1 1.0
N A:PRO486 4.1 41.6 1.0
C A:PRO486 4.1 42.4 1.0
N A:HIS485 4.1 43.6 1.0
O A:PRO486 4.2 44.9 1.0
C A:GLU484 4.2 44.2 1.0
CB A:VAL488 4.3 44.1 1.0
N A:GLU484 4.4 43.4 1.0
CA A:HIS485 4.4 44.8 1.0
O A:GLU484 4.4 48.3 1.0
O A:HOH867 4.5 55.7 1.0
N A:VAL489 4.5 40.9 1.0
O A:LEU482 4.6 44.2 1.0
CA A:GLU484 4.7 44.2 1.0
CB A:MET483 4.7 40.5 1.0
CA A:VAL489 4.8 44.1 1.0
N A:ALA487 4.8 43.0 1.0
C A:ALA487 4.9 36.0 1.0

Reference:

G.Kochan, E.S.Pilka, F.Von Delft, U.Oppermann, W.W.Yue. Structural Snapshots For the Conformation-Dependent Catalysis By Human Medium-Chain Acyl-Coenzyme A Synthetase ACSM2A. J.Mol.Biol. V. 388 997 2009.
ISSN: ISSN 0022-2836
PubMed: 19345228
DOI: 10.1016/J.JMB.2009.03.064
Page generated: Wed Aug 14 08:53:12 2024

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