Magnesium in PDB 3bbx: The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110;

Binding sites:

The binding sites of Magnesium atom in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex (pdb code 3bbx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 110 binding sites of Magnesium where determined in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex, PDB code: 3bbx:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2905 b:10.8 occ:1.00 O B:HOH2999 2.1 10.8 1.0 O B:HOH2997 2.1 10.8 1.0 O B:HOH3002 2.1 10.8 1.0 O B:HOH3001 2.1 10.8 1.0 O B:HOH2998 2.1 10.8 1.0 O B:HOH3000 2.1 10.8 1.0 O3' B:C679 2.8 24.9 1.0 OP2 B:C680 3.0 24.1 1.0 OP1 B:C679 3.0 24.9 1.0 C5' B:C679 3.1 24.9 1.0 P B:C680 3.2 24.1 1.0 O5' B:C679 3.2 24.9 1.0 C3' B:C679 3.3 24.9 1.0 OP1 B:C680 3.5 24.1 1.0 C4' B:C679 3.6 24.9 1.0 P B:C679 3.6 24.9 1.0 OP2 B:C679 4.5 24.9 1.0 O5' B:C680 4.7 24.1 1.0 C2' B:C679 4.8 24.9 1.0 O3' B:C678 4.9 18.9 1.0 O4' B:C679 5.0 24.9 1.0

Magnesium binding site 2 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2906 b:13.8 occ:1.00 O B:HOH3003 2.1 13.8 1.0 O B:HOH3006 2.1 13.8 1.0 O B:HOH3007 2.1 13.8 1.0 O B:HOH3008 2.1 13.8 1.0 O B:HOH3005 2.1 13.8 1.0 O B:HOH3004 2.1 13.8 1.0 OP2 B:U448 3.3 24.8 1.0 OP1 B:A28 3.3 15.7 1.0 C5 B:U448 3.3 35.9 1.0 C4 B:U448 3.7 35.9 1.0 C6 B:U448 3.9 35.9 1.0 O4 B:U448 3.9 35.9 1.0 OP1 B:A472 4.1 40.4 1.0 P B:U448 4.3 24.8 1.0 OP1 B:U448 4.4 24.8 1.0 O3' B:G27 4.4 21.5 1.0 N3 B:U448 4.5 35.9 1.0 P B:A28 4.5 15.7 1.0 N1 B:U448 4.6 35.9 1.0 O2' B:G1259 4.7 22.9 1.0 O3' B:G1259 4.9 22.9 1.0 C4' B:G1259 4.9 22.9 1.0 C2 B:U448 4.9 35.9 1.0

Magnesium binding site 3 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2907 b:21.9 occ:1.00 O6 B:G535 1.7 73.7 1.0 O B:HOH3009 2.1 21.9 1.0 O B:HOH3012 2.1 21.9 1.0 O B:HOH3014 2.1 21.9 1.0 O B:HOH3011 2.1 21.9 1.0 O B:HOH3013 2.1 21.9 1.0 O B:HOH3010 2.1 21.9 1.0 C6 B:G535 2.4 73.7 1.0 O4 B:U534 2.5 41.6 1.0 N7 B:G535 2.8 73.7 1.0 C5 B:G535 2.9 73.7 1.0 C4 B:U534 3.2 41.6 1.0 O6 B:G536 3.3 74.9 1.0 N3 B:U534 3.6 41.6 1.0 O6 B:G559 3.7 41.3 1.0 N7 B:G536 3.7 74.9 1.0 N1 B:G535 3.7 73.7 1.0 C6 B:G536 3.7 74.9 1.0 C5 B:G536 3.9 74.9 1.0 N3 B:U558 4.0 57.0 1.0 O4 B:U558 4.0 57.0 1.0 C8 B:G535 4.1 73.7 1.0 C5 B:U534 4.2 41.6 1.0 C4 B:G535 4.2 73.7 1.0 C4 B:U558 4.5 57.0 1.0 C8 B:G536 4.7 74.9 1.0 C6 B:G559 4.7 41.3 1.0 C2 B:U534 4.8 41.6 1.0 N1 B:G536 4.8 74.9 1.0 N9 B:G535 4.8 73.7 1.0 C2 B:G535 4.9 73.7 1.0 C2 B:U558 5.0 57.0 1.0 N4 B:C557 5.0 26.0 1.0 C4 B:G536 5.0 74.9 1.0

Magnesium binding site 4 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2908 b:5.0 occ:1.00 C5 B:C786 0.7 45.1 1.0 C6 B:C786 1.2 45.1 1.0 C4 B:C786 1.4 45.1 1.0 N1 B:C786 1.9 45.1 1.0 N3 B:C786 2.1 45.1 1.0 O B:HOH3017 2.1 5.0 1.0 O B:HOH3016 2.1 5.0 1.0 O B:HOH3015 2.1 5.0 1.0 C2 B:C786 2.3 45.1 1.0 N4 B:C786 2.5 45.1 1.0 C1' B:C786 3.3 6.7 1.0 O2 B:C786 3.5 45.1 1.0 C5 B:C787 3.7 14.5 1.0 O4' B:C786 3.8 6.7 1.0 C5 B:G785 3.8 33.0 1.0 C4 B:G785 3.9 33.0 1.0 C2' B:C786 3.9 6.7 1.0 C6 B:G785 4.0 33.0 1.0 C3' B:C786 4.1 6.7 1.0 O B:HOH3037 4.1 7.2 1.0 N3 B:G785 4.1 33.0 1.0 C6 B:C787 4.1 14.5 1.0 N1 B:G785 4.2 33.0 1.0 C2 B:G785 4.2 33.0 1.0 O5' B:C786 4.3 6.7 1.0 N7 B:G785 4.3 33.0 1.0 N9 B:G785 4.3 33.0 1.0 C4 B:C787 4.4 14.5 1.0 C4' B:C786 4.5 6.7 1.0 C8 B:G785 4.5 33.0 1.0 C2' B:G785 4.6 22.6 1.0 O6 B:G785 4.6 33.0 1.0 OP2 B:C786 4.7 6.7 1.0 N4 B:C787 4.7 14.5 1.0 C3' B:G785 4.7 22.6 1.0 N1 B:G778 4.8 34.1 1.0 O2' B:C791 4.9 37.0 1.0 C5' B:C786 4.9 6.7 1.0 OP2 B:C787 4.9 16.5 1.0

Magnesium binding site 5 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2909 b:10.4 occ:1.00 O B:HOH3019 2.1 10.4 1.0 O B:HOH3021 2.1 10.4 1.0 O B:HOH3022 2.1 10.4 1.0 O B:HOH3018 2.1 10.4 1.0 O B:HOH3020 2.1 10.4 1.0 OP1 B:A792 2.6 19.0 1.0 OP2 B:A792 3.2 19.0 1.0 P B:A792 3.3 19.0 1.0 C3' B:C791 3.7 37.0 1.0 OP2 B:G785 3.9 22.6 1.0 O3' B:C791 4.0 37.0 1.0 OP2 B:C786 4.5 6.7 1.0 C2' B:C791 4.6 37.0 1.0 O5' B:A792 4.7 19.0 1.0 O B:HOH3040 4.7 7.2 1.0 O2' B:C791 4.8 37.0 1.0 C4' B:C791 4.8 37.0 1.0 C5' B:C791 4.9 37.0 1.0

Magnesium binding site 6 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2910 b:28.9 occ:1.00 N7 B:G1333 0.5 28.9 1.0 C5 B:G1333 1.0 28.9 1.0 C8 B:G1333 1.3 28.9 1.0 C4 B:G1333 1.9 28.9 1.0 N9 B:G1333 2.0 28.9 1.0 O B:HOH3025 2.1 28.9 1.0 O B:HOH3027 2.1 28.9 1.0 O B:HOH3023 2.1 28.9 1.0 O B:HOH3024 2.1 28.9 1.0 O B:HOH3026 2.1 28.9 1.0 C6 B:G1333 2.3 28.9 1.0 O6 B:G1333 3.0 28.9 1.0 N3 B:G1333 3.2 28.9 1.0 N1 B:G1333 3.3 28.9 1.0 C1' B:G1333 3.4 41.0 1.0 C4 B:G1331 3.6 38.5 1.0 C5 B:G1331 3.7 38.5 1.0 C2 B:G1333 3.7 28.9 1.0 N3 B:G1331 3.9 38.5 1.0 O4' B:G1333 3.9 41.0 1.0 N7 B:G1334 3.9 25.4 1.0 C6 B:G1331 3.9 38.5 1.0 C2 B:G1331 4.1 38.5 1.0 N1 B:G1331 4.1 38.5 1.0 N7 B:G1331 4.1 38.5 1.0 N9 B:G1331 4.1 38.5 1.0 C2' B:G1333 4.2 41.0 1.0 C8 B:G1331 4.3 38.5 1.0 O5' B:G1333 4.3 41.0 1.0 C8 B:G1334 4.5 25.4 1.0 C3' B:G1333 4.5 41.0 1.0 O6 B:G1331 4.6 38.5 1.0 O B:HOH3167 4.6 21.6 1.0 C2' B:G1331 4.6 35.8 1.0 C4' B:G1333 4.8 41.0 1.0 N2 B:G1331 4.9 38.5 1.0 OP2 B:G1333 4.9 41.0 1.0 C5 B:G1334 4.9 25.4 1.0 C1' B:G1331 5.0 35.8 1.0

Magnesium binding site 7 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2911 b:58.0 occ:1.00 O B:HOH3032 2.1 58.0 1.0 O B:HOH3028 2.1 58.0 1.0 O B:HOH3031 2.1 58.0 1.0 O B:HOH3029 2.1 58.0 1.0 O B:HOH3030 2.1 58.0 1.0 OP2 B:G1131 3.4 33.7 1.0 O3' B:C2515 3.6 28.9 1.0 O2' B:C2515 3.7 28.9 1.0 C4' B:C2515 4.1 28.9 1.0 C3' B:C2515 4.3 28.9 1.0 C5' B:A2516 4.5 30.9 1.0 C2' B:C2515 4.6 28.9 1.0 OP1 B:A2516 4.6 30.9 1.0 P B:A2516 4.7 30.9 1.0 P B:G1131 4.9 33.7 1.0 O3' B:A1129 4.9 31.8 1.0 C5' B:C2515 4.9 28.9 1.0

Magnesium binding site 8 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2912 b:39.4 occ:1.00 C5' B:A996 0.7 53.4 1.0 C4' B:A996 1.2 53.4 1.0 O5' B:A996 1.4 53.4 1.0 O4' B:A996 1.8 53.4 1.0 O B:HOH3034 2.1 39.4 1.0 O B:HOH3033 2.1 39.4 1.0 O B:HOH3035 2.1 39.4 1.0 O B:HOH3036 2.1 39.4 1.0 C3' B:A996 2.5 53.4 1.0 P B:A996 2.6 53.4 1.0 OP2 B:A996 2.8 53.4 1.0 C1' B:A996 3.1 53.4 1.0 C2' B:A996 3.4 53.4 1.0 O3' B:A996 3.5 53.4 1.0 OP1 B:A996 3.5 53.4 1.0 O3' B:C995 3.7 62.7 1.0 N9 B:A996 3.8 61.3 1.0 C8 B:A996 3.8 61.3 1.0 O2' B:A996 4.2 53.4 1.0 CG2 Q:ILE93 4.9 77.7 1.0 P B:G997 4.9 52.3 1.0 C3' B:C995 5.0 62.7 1.0

Magnesium binding site 9 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2913 b:7.2 occ:1.00 C2' B:C791 1.0 37.0 1.0 C1' B:C791 1.3 37.0 1.0 O2' B:C791 1.5 37.0 1.0 N1 B:C791 1.8 23.1 1.0 O B:HOH3040 2.1 7.2 1.0 O B:HOH3037 2.1 7.2 1.0 O B:HOH3039 2.1 7.2 1.0 O B:HOH3038 2.1 7.2 1.0 C6 B:C791 2.4 23.1 1.0 C3' B:C791 2.5 37.0 1.0 O4' B:C791 2.6 37.0 1.0 C2 B:C791 2.8 23.1 1.0 C4' B:C791 3.1 37.0 1.0 O3' B:C791 3.2 37.0 1.0 O2 B:C791 3.2 23.1 1.0 C5 B:C791 3.5 23.1 1.0 O5' B:C791 3.7 37.0 1.0 N3 B:C791 3.9 23.1 1.0 O B:HOH3019 4.0 10.4 1.0 C5' B:C791 4.0 37.0 1.0 C4 B:C791 4.1 23.1 1.0 OP2 B:A792 4.4 19.0 1.0 P B:A792 4.5 19.0 1.0 O B:HOH3015 4.5 5.0 1.0 OP2 B:C787 4.6 16.5 1.0 OP2 B:C786 4.7 6.7 1.0 C5 B:C787 4.7 14.5 1.0

Magnesium binding site 10 out of 110 in the The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The HSP15 Protein Fitted Into the Low Resolution Cryo-Em Map of the 50S.Nc-Trna.HSP15 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2914 b:41.4 occ:1.00 C4' B:G776 0.5 39.8 1.0 C5' B:G776 1.2 39.8 1.0 C3' B:G776 1.5 39.8 1.0 O4' B:G776 1.9 39.8 1.0 O B:HOH3042 2.1 41.4 1.0 O B:HOH3043 2.1 41.4 1.0 O B:HOH3044 2.1 41.4 1.0 O B:HOH3045 2.1 41.4 1.0 O B:HOH3041 2.1 41.4 1.0 O5' B:G776 2.2 39.8 1.0 C2' B:G776 2.5 39.8 1.0 O3' B:G776 2.5 39.8 1.0 C1' B:G776 2.7 39.8 1.0 O5' B:G777 3.0 18.9 1.0 O4' B:G777 3.3 18.9 1.0 P B:G777 3.3 18.9 1.0 C5' B:G777 3.6 18.9 1.0 P B:G776 3.6 39.8 1.0 OP1 B:G777 3.7 18.9 1.0 N9 B:G776 3.7 38.7 1.0 O2' B:G776 3.8 39.8 1.0 C8 B:G777 3.8 31.9 1.0 C4' B:G777 4.0 18.9 1.0 O3' B:G775 4.1 11.5 1.0 C8 B:G776 4.1 38.7 1.0 OP1 B:G776 4.1 39.8 1.0 C1' B:G777 4.4 18.9 1.0 N9 B:G777 4.5 31.9 1.0 C4' B:G775 4.5 11.5 1.0 OP2 B:G777 4.6 18.9 1.0 OP2 B:G776 4.7 39.8 1.0 N7 B:G777 4.8 31.9 1.0 C3' B:G775 4.9 11.5 1.0 C4 B:G776 4.9 38.7 1.0

L.Jiang, C.Schaffitzel, R.Bingel-Erlenmeyer, N.Ban, P.Korber, R.I.Koning, D.C.De Geus, J.R.Plaisier, J.P.Abrahams. Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-Trna Complexes By the Heat Shock Protein HSP15. J.Mol.Biol. V. 386 1357 2009.
ISSN: ISSN 0022-2836
PubMed: 19013177
DOI: 10.1016/J.JMB.2008.10.079