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Magnesium in PDB 3c51: Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A

Enzymatic activity of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A

All present enzymatic activity of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A:
2.7.11.14;

Protein crystallography data

The structure of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A, PDB code: 3c51 was solved by P.Singh, J.J.G.Tesmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.88 / 3.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.657, 92.527, 259.383, 90.00, 90.00, 90.00
R / Rfree (%) 28.1 / n/a

Other elements in 3c51:

The structure of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A also contains other interesting chemical elements:

Bromine (Br) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A (pdb code 3c51). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A, PDB code: 3c51:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 3c51

Go back to Magnesium Binding Sites List in 3c51
Magnesium binding site 1 out of 4 in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg563

b:0.9
occ:1.00
 O2A A:ADP562 2.3 0.4 1.0
O3B A:ADP562 2.4 0.5 1.0
OD2 A:ASP332 3.1 0.4 1.0
ND2 A:ASN319 3.2 0.8 1.0
PA A:ADP562 3.5 0.1 1.0
O3A A:ADP562 3.6 0.5 1.0
PB A:ADP562 3.6 0.2 1.0
OD1 A:ASN319 4.0 0.1 1.0
CG A:ASN319 4.0 0.9 1.0
CG A:ASP332 4.1 0.6 1.0
C5' A:ADP562 4.3 0.2 1.0
O5' A:ADP562 4.3 0.7 1.0
O3' A:ADP562 4.3 0.4 1.0
O1B A:ADP562 4.6 0.9 1.0
CB A:ASP332 4.6 0.6 1.0
O2B A:ADP562 4.6 0.1 1.0
C3' A:ADP562 4.7 0.7 1.0
O1A A:ADP562 4.7 0.5 1.0
OE2 A:GLU318 4.9 0.6 1.0

Magnesium binding site 2 out of 4 in 3c51

Go back to Magnesium Binding Sites List in 3c51
Magnesium binding site 2 out of 4 in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg564

b:0.6
occ:1.00
 OD1 A:ASP332 2.2 0.2 1.0
O2B A:ADP562 2.8 0.1 1.0
CG A:ASP332 2.9 0.6 1.0
OD2 A:ASP332 2.9 0.4 1.0
O3B A:ADP562 3.2 0.5 1.0
PB A:ADP562 3.4 0.2 1.0
O1B A:ADP562 4.1 0.9 1.0
CA A:GLY334 4.3 0.3 1.0
CB A:ASP332 4.4 0.6 1.0
N A:GLY334 4.5 0.3 1.0
NZ A:LYS216 4.7 0.4 1.0
O3A A:ADP562 4.8 0.5 1.0
CA A:ASP332 4.9 0.8 1.0
OE2 A:GLU235 4.9 0.1 1.0
C A:GLY334 4.9 0.4 1.0

Magnesium binding site 3 out of 4 in 3c51

Go back to Magnesium Binding Sites List in 3c51
Magnesium binding site 3 out of 4 in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg563

b:0.6
occ:1.00
 O2A B:ADP562 2.3 0.3 1.0
O3B B:ADP562 2.5 0.0 1.0
OD1 B:ASN319 2.8 0.1 1.0
ND2 B:ASN319 2.9 0.6 1.0
CG B:ASN319 3.2 0.6 1.0
PA B:ADP562 3.5 0.1 1.0
OD2 B:ASP332 3.6 0.2 1.0
PB B:ADP562 3.7 0.5 1.0
O3A B:ADP562 3.7 0.9 1.0
CG B:ASP332 3.9 0.6 1.0
O3' B:ADP562 4.1 0.1 1.0
CB B:ASP332 4.2 0.7 1.0
O1A B:ADP562 4.2 0.4 1.0
OD1 B:ASP332 4.5 0.6 1.0
O1B B:ADP562 4.6 0.7 1.0
OE2 B:GLU318 4.6 0.3 1.0
CB B:ASN319 4.7 0.1 1.0
O5' B:ADP562 4.7 0.9 1.0
O2B B:ADP562 4.8 0.8 1.0
C3' B:ADP562 4.9 0.0 1.0

Magnesium binding site 4 out of 4 in 3c51

Go back to Magnesium Binding Sites List in 3c51
Magnesium binding site 4 out of 4 in the Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of G Protein Coupled Receptor Kinase 1 Bound to Adp and Magnesium Chloride at 3.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg564

b:0.4
occ:1.00
 O2B B:ADP562 1.9 0.8 1.0
OD1 B:ASP332 2.6 0.6 1.0
PB B:ADP562 3.0 0.5 1.0
O1B B:ADP562 3.5 0.7 1.0
NZ B:LYS216 3.5 0.7 1.0
O3B B:ADP562 3.6 0.0 1.0
OE2 B:GLU235 3.6 0.9 1.0
CG B:ASP332 3.8 0.6 1.0
CA B:GLY334 3.9 0.3 1.0
N B:GLY334 4.3 0.3 1.0
O3A B:ADP562 4.3 0.9 1.0
OD2 B:ASP332 4.4 0.2 1.0
O1A B:ADP562 4.5 0.4 1.0
CE B:LYS216 4.6 0.0 1.0
CD B:GLU235 4.7 0.3 1.0
C B:GLY334 4.9 0.2 1.0
CB B:ASP332 4.9 0.7 1.0

Reference:

P.Singh, B.Wang, T.Maeda, K.Palczewski, J.J.Tesmer. Structures of Rhodopsin Kinase in Different Ligand States Reveal Key Elements Involved in G Protein-Coupled Receptor Kinase Activation. J.Biol.Chem. V. 283 14053 2008.
ISSN: ISSN 0021-9258
PubMed: 18339619
DOI: 10.1074/JBC.M708974200
Page generated: Sun Aug 10 18:01:04 2025

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