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Magnesium in PDB 3cvj: Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution, PDB code: 3cvj was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.57 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.490, 83.430, 183.770, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution (pdb code 3cvj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution, PDB code: 3cvj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3cvj

Go back to Magnesium Binding Sites List in 3cvj
Magnesium binding site 1 out of 2 in the Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg243

b:19.6
occ:1.00
OE1 A:GLU57 2.1 30.9 1.0
OE1 B:GLU57 2.1 29.6 1.0
NE2 B:HIS53 2.2 28.8 1.0
OE2 A:GLU57 2.2 29.0 1.0
OE2 B:GLU57 2.3 30.8 1.0
NE2 A:HIS53 2.3 29.2 1.0
CD A:GLU57 2.5 31.2 1.0
CD B:GLU57 2.5 29.4 1.0
CE1 B:HIS53 3.1 28.8 1.0
CD2 A:HIS53 3.2 29.1 1.0
CD2 B:HIS53 3.2 28.7 1.0
CE1 A:HIS53 3.4 29.9 1.0
CG A:GLU57 4.0 30.0 1.0
CG B:GLU57 4.0 29.4 1.0
CE B:MSE78 4.0 30.8 1.0
CE A:MSE78 4.0 32.9 1.0
ND1 B:HIS53 4.2 29.0 1.0
CG B:HIS53 4.3 28.4 1.0
CG A:HIS53 4.4 28.6 1.0
ND1 A:HIS53 4.5 29.1 1.0
O A:HOH283 4.5 22.0 1.0
CB A:MSE54 4.5 34.5 1.0
O B:HOH259 4.6 24.9 1.0
CB B:MSE54 4.6 33.8 1.0
CA A:MSE54 4.7 32.4 1.0
CA B:MSE54 4.7 32.8 1.0
CB A:GLU57 4.8 29.5 1.0
CB B:GLU57 4.8 29.4 1.0

Magnesium binding site 2 out of 2 in 3cvj

Go back to Magnesium Binding Sites List in 3cvj
Magnesium binding site 2 out of 2 in the Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Phosphoheptose Isomerase (BH3325) From Bacillus Halodurans C-125 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg243

b:21.4
occ:1.00
NE2 D:HIS53 2.1 26.7 1.0
OE1 D:GLU57 2.1 30.2 1.0
OE1 C:GLU57 2.2 30.9 1.0
OE2 D:GLU57 2.2 29.4 1.0
NE2 C:HIS53 2.2 29.2 1.0
CD D:GLU57 2.5 30.5 1.0
OE2 C:GLU57 2.5 29.8 1.0
CD C:GLU57 2.7 30.7 1.0
CE1 D:HIS53 3.0 27.4 1.0
CD2 D:HIS53 3.0 26.6 1.0
CE1 C:HIS53 3.1 29.7 1.0
CD2 C:HIS53 3.3 28.5 1.0
CE D:MSE78 3.9 30.5 1.0
CG D:GLU57 4.0 29.3 1.0
CE C:MSE78 4.1 32.8 1.0
ND1 D:HIS53 4.1 28.6 1.0
CG C:GLU57 4.1 29.5 1.0
CG D:HIS53 4.2 27.8 1.0
ND1 C:HIS53 4.3 29.5 1.0
CG C:HIS53 4.4 28.8 1.0
O D:HOH318 4.5 31.9 1.0
O C:HOH296 4.5 26.7 1.0
CB D:MSE54 4.6 32.6 1.0
CA D:MSE54 4.6 30.8 1.0
CB C:MSE54 4.7 34.6 1.0
CB D:GLU57 4.9 30.4 1.0
CA C:MSE54 4.9 33.0 1.0
CB C:GLU57 4.9 30.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Aug 14 11:57:14 2024

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