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Magnesium in PDB 3cz1: Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0

Protein crystallography data

The structure of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0, PDB code: 3cz1 was solved by M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, M.Tegoni, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.413, 75.652, 84.101, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 19.8

Other elements in 3cz1:

The structure of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0 (pdb code 3cz1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0, PDB code: 3cz1:

Magnesium binding site 1 out of 1 in 3cz1

Go back to Magnesium Binding Sites List in 3cz1
Magnesium binding site 1 out of 1 in the Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimeric Crystal Structure of A Pheromone Binding Protein From Apis Mellifera in Complex with the N-Butyl Benzene Sulfonamide at pH 7.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg120

b:15.9
occ:1.00
O B:HOH329 2.1 13.2 1.0
O B:HOH331 2.1 14.4 1.0
O B:HOH330 2.1 14.7 1.0
O A:HOH267 2.1 17.4 1.0
O A:HOH248 2.1 14.9 1.0
O A:HOH246 2.2 15.3 1.0
O A:HOH247 3.9 21.3 1.0
OE2 A:GLU54 4.1 12.4 1.0
O B:HOH272 4.1 14.8 1.0
O A:HOH138 4.1 17.8 1.0
O B:HOH282 4.2 22.4 1.0
O B:HOH259 4.3 19.1 1.0
O A:HOH156 4.3 21.3 1.0
O A:HOH173 4.3 17.1 1.0
CA B:GLY72 4.4 12.5 1.0
O B:HOH317 4.4 27.8 1.0
O B:GLY72 4.5 12.3 1.0
O A:HOH164 4.5 20.0 1.0
CG A:GLU54 4.5 8.3 1.0
O B:HOH295 4.6 33.1 1.0
O A:GLU54 4.7 8.5 1.0
CD A:GLU54 4.7 9.8 1.0
C B:GLY72 4.9 12.4 1.0
O B:HOH246 5.0 13.6 1.0
O A:HOH129 5.0 14.1 1.0

Reference:

M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, V.Campanacci, M.Tegoni, C.Cambillau. Queen Bee Pheromone Binding Protein pH-Induced Domain Swapping Favors Pheromone Release J.Mol.Biol. V. 390 981 2009.
ISSN: ISSN 0022-2836
PubMed: 19481550
DOI: 10.1016/J.JMB.2009.05.067
Page generated: Wed Aug 14 11:58:58 2024

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