Atomistry » Magnesium » PDB 3dfy-3dts » 3dr1
Atomistry »
  Magnesium »
    PDB 3dfy-3dts »
      3dr1 »

Magnesium in PDB 3dr1: Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor

Enzymatic activity of Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor

All present enzymatic activity of Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor:
2.3.1.48;

Protein crystallography data

The structure of Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor, PDB code: 3dr1 was solved by Y.Sato, N.Rochel, D.Moras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.100, 66.100, 265.600, 90.00, 90.00, 120.00
R / Rfree (%) 22.6 / 28.6

Other elements in 3dr1:

The structure of Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor also contains other interesting chemical elements:

Fluorine (F) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor (pdb code 3dr1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor, PDB code: 3dr1:

Magnesium binding site 1 out of 1 in 3dr1

Go back to Magnesium Binding Sites List in 3dr1
Magnesium binding site 1 out of 1 in the Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Side-Chain Fluorine Atoms of Non-Steroidal Vitamin D3 Analogs Stabilize Helix 12 of Vitamin D Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1

b:59.6
occ:1.00
SG A:CYS388 3.0 50.8 1.0
OE1 A:GLN384 3.9 49.5 1.0
CB A:CYS388 3.9 52.2 1.0
OD1 A:ASP385 4.0 65.9 1.0
OH A:TYR406 4.3 63.7 1.0
CD A:GLN384 4.7 48.7 1.0

Reference:

G.Eelen, N.Valle, Y.Sato, N.Rochel, L.Verlinden, P.De Clercq, D.Moras, R.Bouillon, A.Munoz, A.Verstuyf. Superagonistic Fluorinated Vitamin D3 Analogs Stabilize Helix 12 of the Vitamin D Receptor. Chem.Biol. V. 15 1029 2008.
ISSN: ISSN 1074-5521
PubMed: 18940664
DOI: 10.1016/J.CHEMBIOL.2008.08.008
Page generated: Sun Aug 10 20:11:01 2025

Last articles

Mg in 6CA4
Mg in 6C90
Mg in 6CA0
Mg in 6C9Y
Mg in 6C8Z
Mg in 6C8P
Mg in 6C8N
Mg in 6C8O
Mg in 6C8D
Mg in 6C8L
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy