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Magnesium in PDB 3ec2: Crystal Structure of the Dnac Helicase Loader

Protein crystallography data

The structure of Crystal Structure of the Dnac Helicase Loader, PDB code: 3ec2 was solved by M.L.Mott, J.P.Erzberger, M.M.Coons, J.M.Berger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 84.492, 84.492, 51.113, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 27.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Dnac Helicase Loader (pdb code 3ec2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Dnac Helicase Loader, PDB code: 3ec2:

Magnesium binding site 1 out of 1 in 3ec2

Go back to Magnesium Binding Sites List in 3ec2
Magnesium binding site 1 out of 1 in the Crystal Structure of the Dnac Helicase Loader


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Dnac Helicase Loader within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg300

b:43.9
occ:1.00
OG1 A:THR93 2.3 48.4 1.0
O1B A:ADP222 2.5 53.0 1.0
O3B A:ADP222 3.3 56.1 1.0
CB A:THR93 3.5 49.3 1.0
PB A:ADP222 3.5 54.6 1.0
OD1 A:ASP148 3.5 59.7 1.0
OD1 A:ASP149 3.8 65.7 1.0
O2A A:ADP222 4.2 51.5 1.0
OD2 A:ASP148 4.3 57.9 1.0
CG A:ASP148 4.3 56.4 1.0
CG2 A:THR93 4.4 48.4 1.0
N A:THR93 4.4 50.3 1.0
CA A:THR93 4.5 49.6 1.0
O2B A:ADP222 4.5 52.9 1.0
O3A A:ADP222 4.7 51.0 1.0
CG A:ASP149 4.8 62.2 1.0
OH A:TYR45 4.8 52.4 1.0
OG1 A:THR180 4.8 58.8 1.0
PA A:ADP222 4.9 52.2 1.0

Reference:

M.L.Mott, J.P.Erzberger, M.M.Coons, J.M.Berger. Structural Synergy and Molecular Crosstalk Between Bacterial Helicase Loaders and Replication Initiators. Cell(Cambridge,Mass.) V. 135 623 2008.
ISSN: ISSN 0092-8674
PubMed: 19013274
DOI: 10.1016/J.CELL.2008.09.058
Page generated: Sun Aug 10 20:27:19 2025

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