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Magnesium in PDB 3fi8: Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020

Protein crystallography data

The structure of Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020, PDB code: 3fi8 was solved by A.K.Wernimont, J.C.Pizarro, J.D.Artz, M.F.Amaya, T.Xiao, J.Lew, G.Wasney, G.Senesterra, I.Kozieradzki, D.Cossar, M.Vedadi, M.Schapira, A.Bochkarev, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, R.Hui, T.Hills, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.380, 64.556, 91.557, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 26.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020 (pdb code 3fi8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020, PDB code: 3fi8:

Magnesium binding site 1 out of 1 in 3fi8

Go back to Magnesium Binding Sites List in 3fi8
Magnesium binding site 1 out of 1 in the Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg441

b:45.2
occ:1.00
OD2 A:ASP305 2.1 35.2 1.0
O A:HOH19 2.2 45.4 1.0
OD1 A:ASN293 2.3 19.8 1.0
O3A A:ADP1 2.9 55.5 1.0
O1A A:ADP1 3.0 51.3 1.0
CG A:ASP305 3.2 33.1 1.0
CG A:ASN293 3.4 19.0 1.0
PA A:ADP1 3.6 51.1 1.0
O2B A:ADP1 3.6 59.1 1.0
CB A:ASP305 3.6 28.9 1.0
ND2 A:ASN293 3.8 18.4 1.0
PB A:ADP1 3.8 58.4 1.0
O1B A:ADP1 4.0 59.3 1.0
O A:HOH460 4.1 63.1 1.0
O A:HOH48 4.2 39.6 1.0
OD1 A:ASP305 4.3 38.3 1.0
N A:OPE603 4.3 43.5 0.5
C5' A:ADP1 4.5 43.9 1.0
O5' A:ADP1 4.5 48.4 1.0
O A:ASN292 4.5 19.9 1.0
CB A:ASN293 4.7 18.6 1.0
O A:HOH29 4.8 38.7 1.0
OD2 A:ASP288 4.8 30.2 1.0
O2A A:ADP1 4.8 52.3 1.0
C A:ASN292 5.0 20.1 1.0
CA A:ASN293 5.0 19.4 1.0

Reference:

A.K.Wernimont, J.C.Pizarro, J.D.Artz, M.F.Amaya, T.Xiao, J.Lew, G.Wasney, G.Senesterra, I.Kozieradzki, D.Cossar, M.Vedadi, M.Schapira, A.Bochkarev, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, R.Hui, T.Hills. Crystal Structure of Choline Kinase From Plasmodium Falciparum, PF14_0020 To Be Published.
Page generated: Sun Aug 10 21:00:36 2025

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