Magnesium in PDB 3gj4: Crystal Structure of Human Rangdp-NUP153ZNF3 Complex

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.47 / 2.15
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.422, 61.567, 72.062, 90.00, 110.01, 90.00
R / Rfree (%)	20.5 / 25.7

The structure of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex (pdb code 3gj4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex, PDB code: 3gj4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:42.6 occ:1.00 O A:HOH219 2.1 37.0 1.0 O A:HOH220 2.2 29.9 1.0 O A:HOH221 2.3 37.0 1.0 O1B A:GDP302 2.3 36.2 1.0 OG1 A:THR24 2.3 37.3 1.0 O A:HOH218 2.4 32.4 1.0 O2B A:GDP302 3.2 33.2 1.0 CB A:THR24 3.4 38.4 1.0 PB A:GDP302 3.4 36.7 1.0 O A:THR66 4.0 37.9 1.0 OG1 A:THR66 4.0 42.7 1.0 N A:THR24 4.1 32.0 1.0 O2A A:GDP302 4.1 27.3 1.0 OD2 A:ASP65 4.2 35.3 1.0 OD1 A:ASP65 4.2 30.4 1.0 CA A:THR24 4.3 36.3 1.0 OE2 A:GLU70 4.3 34.3 1.0 O3B A:GDP302 4.3 37.1 1.0 CG2 A:THR24 4.4 43.4 1.0 O3A A:GDP302 4.6 33.1 1.0 CG A:ASP65 4.6 36.4 1.0 N A:GLY68 4.7 34.3 1.0 PA A:GDP302 4.7 38.3 1.0 C A:THR66 4.8 37.9 1.0 O1A A:GDP302 4.8 39.1 1.0 CE A:LYS23 4.9 40.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF3 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF3 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:36.8 occ:1.00 O C:HOH313 2.2 31.9 1.0 O C:HOH221 2.3 41.3 1.0 O C:HOH217 2.3 32.0 1.0 O C:HOH219 2.4 39.3 1.0 OG1 C:THR24 2.4 39.5 1.0 O1B C:GDP302 2.4 34.4 1.0 CB C:THR24 3.3 34.3 1.0 O2B C:GDP302 3.4 32.7 1.0 PB C:GDP302 3.5 36.2 1.0 O C:THR66 4.0 38.5 1.0 O2A C:GDP302 4.0 33.0 1.0 OD2 C:ASP65 4.1 35.4 1.0 OG1 C:THR66 4.2 31.5 1.0 N C:THR24 4.2 28.2 1.0 CG2 C:THR24 4.3 40.3 1.0 CA C:THR24 4.3 33.9 1.0 OD1 C:ASP65 4.3 29.6 1.0 O3B C:GDP302 4.5 28.1 1.0 OE2 C:GLU70 4.5 34.9 1.0 CG C:ASP65 4.6 36.7 1.0 O3A C:GDP302 4.7 37.9 1.0 N C:GLY68 4.7 38.2 1.0 PA C:GDP302 4.7 33.6 1.0 O1A C:GDP302 4.8 39.4 1.0 C C:THR66 4.9 34.7 1.0 CA C:GLY68 4.9 41.2 1.0 O C:HOH233 5.0 39.8 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011