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Magnesium in PDB 3gon: Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp

Enzymatic activity of Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp

All present enzymatic activity of Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp:
2.7.4.2;

Protein crystallography data

The structure of Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp, PDB code: 3gon was solved by J.L.Andreassi, P.W.Bilder, M.W.Vetting, S.L.Roderick, T.S.Leyh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.38 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.977, 115.285, 39.960, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 20.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp (pdb code 3gon). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp, PDB code: 3gon:

Magnesium binding site 1 out of 1 in 3gon

Go back to Magnesium Binding Sites List in 3gon
Magnesium binding site 1 out of 1 in the Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Streptococcus Pneumoniae Phosphomevalonate Kinase in Complex with Phosphomevalonate and Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg600

b:20.3
occ:1.00
 O A:HOH336 2.0 14.8 1.0
O A:HOH338 2.2 14.3 1.0
OD2 A:ASP297 2.2 17.1 1.0
O A:HOH337 2.2 17.7 1.0
OP2 A:PMV400 2.2 13.8 1.0
O1G A:ANP500 2.3 20.0 1.0
CG A:ASP297 3.3 16.9 1.0
P A:PMV400 3.4 15.3 1.0
OP1 A:PMV400 3.6 14.4 1.0
PG A:ANP500 3.7 20.0 1.0
CB A:ASP297 3.9 13.7 1.0
OG A:SER213 3.9 28.6 1.0
NZ A:LYS101 3.9 29.2 1.0
OP3 A:PMV400 4.0 13.3 1.0
O A:GLY103 4.2 15.8 1.0
N A:ALA293 4.3 9.5 1.0
O A:ALA211 4.3 24.2 1.0
O A:HOH339 4.3 10.1 1.0
O3G A:ANP500 4.3 21.8 1.0
CA A:GLY103 4.4 14.8 1.0
OD1 A:ASP297 4.4 16.0 1.0
O A:HOH364 4.4 18.4 1.0
N3B A:ANP500 4.5 27.0 1.0
CB A:ALA293 4.6 10.1 1.0
O5 A:PMV400 4.7 15.4 1.0
C A:GLY103 4.7 15.0 1.0
O A:SER291 4.8 10.2 1.0
O2G A:ANP500 4.8 22.0 1.0
CA A:GLY292 4.9 10.5 1.0
CE A:LYS101 4.9 28.6 1.0
CB A:ALA211 5.0 24.1 1.0

Reference:

J.L.Andreassi, M.W.Vetting, P.W.Bilder, S.L.Roderick, T.S.Leyh. Structure of the Ternary Complex of Phosphomevalonate Kinase: the Enzyme and Its Family Biochemistry V. 48 6461 2009.
ISSN: ISSN 0006-2960
PubMed: 19485344
DOI: 10.1021/BI900537U
Page generated: Wed Aug 14 14:53:44 2024

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